For me it was stereo which didn’t exist in coot 1. 
Sent from my iPhone

> On 24 Aug 2026, at 08:37, Chunxiang Wu 
> <[email protected]> wrote:
> 
> Coot 1.x has worked very well for me now.  Here are what troubled me 
> initially (not complaint, only for feedback):
> (1) I was using Phenix connected to Coot a lot.  The 0.9 Coot can work 
> seamlessly with Phenix refine and its validation. It's convenient to click on 
> the phenix validation entries and coot auto-move to those areas.  I have not 
> figure out how to do it for coot 1.x yet.
> (2) the mouse operation is different (left key>>right key to rotate and right 
> key>>shift+right key to zoom).  Adapt to the Coot 1.x need some time when you 
> having existing muscle memory.  It would still be good if coot 1.x could 
> offer a “legacy mouse operation” option for transiting users.
> Cheers,
> Charlie
> 
>> On Aug 24, 2026, at 10:22 AM, Paul Emsley 
>> <[email protected]> wrote:
>> 
>>> On 23/08/2026 08:49, Engin Özkan wrote:
>>> 
>>> Hi Oliver,
>>> 
>>> Coot 0.9 will not likely see any updates, so this is a temporary solution 
>>> until we all manage to move to Coot 1.
>>> 
>> Changing the gui for 0.9.x is not so much fun - particularly after moving to 
>> the new tools/libraries.
>> 
>> Anyway... If I can jump on this thread and divert it somewhat... what are 
>> the pain points of moving to Coot 1.x?
>> 
>> Paul.
>> 
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