Hi Engin,Sorry, I had missed Matthew's attachment -- so we are all seeing the same things. For those still relying on Coot 0.9, the Bandicoot project may be the way to go: https://github.com/fraser-lab/bandicoot
Best, Oliver On 23.08.26 09:49, Engin Özkan wrote:
Hi Oliver,Yes, that's the thin row of corrupted space at the top, similar to the picture Matthew had attached. But you can load maps and coordinates, and everything works in my hands.The loss of the bottom row is the only lost functionality I can see (I had missed it). That is significant, indeed. Though you can make up for that by running coot from a terminal and looking at the output there, I believe. It beats immediate crashing, as has been the case lately.Coot 0.9 will not likely see any updates, so this is a temporary solution until we all manage to move to Coot 1.Engin On 8/23/26 2:07 AM, Oliver H. Weiergräber wrote:Hello Engin and Matthew,Using Coot 0.9.8.96 (ccp4) on a Macbook Air M2 (running latest OS and XQuartz, as mentioned above), this is what I am getting (see attached screenshot). As you can see, the bottom row (for display of status information) is mostly drawn black, and there is an additional horizontal area on top which should not be there. Btw, the icons displayed there are actually copies of the main toolbar on the right, and their number may change when resizing the window. Clearly a case of graphics corruption.Of course I tried deleting the .coot-preferences directory as well as local state files, without effect.Best, Oliver On 22.08.26 21:12, Engin Özkan wrote:For extra data on this, everything I could test was fine with an M1 MacBook Pro and Xquartz 2.8.6 (stable) on Tahoe 26.6.2. All pop-up windows I tried worked as intended. This is with 0.9.8.96 (installed via ccp4, version 9.0.017).The only issue I have is a thin row of corrupted space (same thickness as the menu bar) under the menu bar, or sequence viewer when turned on, but it does not affect usability much. An upgrade to 2.8.7beta3 does not fix this issue, so I would not suggest it yet.Engin On 8/22/26 12:41 PM, Matthew Snee wrote:Hi OliverI have tested two macs now using xquartz 2.8.6 and coot 0.9.8.93 EL and both an M4 MAX studio and an M2 MacBook Air with the latest Tahoe.I tested looking at maps and some refinement features etc.. Obviously I cant test everything but dialogue boxes and stuff are all working fine for me.I'm not recommending anyone assumes it will work with their hardware, but I thought everyone was in the same boat as me where it wouldn't even launch?Best wishes Matthew. Sent from Outlook for iOS <https://aka.ms/o0ukef> ------------------------------------------------------------------------ *From:* Oliver H. Weiergräber <[email protected]> *Sent:* Saturday, August 22, 2026 6:12 pm*To:* Matthew Snee <[email protected]>; [email protected] <[email protected]>*Subject:* Re: [ccp4bb] Quartz/Coot 0.9.8.96 Dear Matthew, For me, using Tahoe 26.6.2 and XQuartz 2.8.6, Coot 0.9 starts up with a partly corrupted workspace. Are you maybe referring to XQuartz 2.8.7beta? Best, Oliver On 21.08.26 18:27, Matthew Snee wrote: > Hi All > > Just to let everyone know, but the latest Xquartz or Tahoe update> appears to have fixed the (OpenGL) issue in Xquartz that broke Coot 0.9> versions for mac. > > *Matthew Snee, PhD* > > Post-doctoral Research Associate > >> The Baldock Lab | Michael Smith Building C3.214 | Wellcome Trust Centre > for Cell-Matrix Research |Division of Cell Matrix Biology & Regenerative> Medicine| School of Biological Sciences| Faculty of Biology, Medicine > and Health, University of Manchester, Oxford Road, Manchester M13 9PT > > Lab Tel: +44 (0)161 306 2869 > > cell-matrix-research > >> ------------------------------------------------------------------------> > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > <https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1> > ------------------------------------------------------------------------ To unsubscribe from the CCP4BB list, click the following link:https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 <https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1>------------------------------------------------------------------------ To unsubscribe from the CCP4BB list, click the following link:https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 <https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1>
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