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2025/04/10 (airavata) branch cybershuttle-staging updated: Minor logging improvements dimuthuupe
2025/04/10 (airavata) branch cybershuttle-staging updated: Allow terminated & stopped sessions from being blocked dimuthuupe
2025/04/10 (airavata) branch cybershuttle-staging updated: Support session termination & deletion on jupyter dimuthuupe
2025/04/10 (airavata) branch cybershuttle-staging updated (43dab315f9 -> f063461cd6) dimuthuupe
2025/04/10 (airavata) branch cybershuttle-staging updated: resolve cell id not incrementing in remote exec mode yasith
2025/04/10 (airavata) branch orchestratorTaskBreakdown deleted (was 85885d9cbf) yasith
2025/04/10 (airavata) 01/01: Merge pull request #489 from ganning127/agenda-change ganning
2025/04/10 (airavata) branch cybershuttle-staging updated (9308a2423c -> 96e9689ae5) ganning
2025/04/10 (airavata) 06/06: add overlay fs to agent for rw access. update makefile scripts, add stderr logging to agent yasith
2025/04/10 (airavata) 01/01: Merge pull request #488 from ganning127/fixes-for-thurs ganning
2025/04/10 (airavata) branch cybershuttle-staging updated (1fb8450b81 -> 9308a2423c) ganning
2025/04/10 (airavata) branch cybershuttle-staging updated: move env_name generation to AgentManagementHandler yasith
2025/04/10 (airavata) branch cybershuttle-staging updated: add separate --environ input to agent. add js2 targets to makefile. update sdk to pass environ yasith
2025/04/10 (airavata) 03/06: update agent to accept libraries, pip, and mounts as input. yasith
2025/04/10 (airavata) 02/06: Add auth to swagger dimuthuupe
2025/04/10 (airavata) branch staging deleted (was f025f12142) yasith
2025/04/10 (airavata) 02/06: ide-integration docker-compose changes yasith
2025/04/10 (airavata) branch cybershuttle-staging updated (3069b06b8b -> f95f2a916e) ganning
2025/04/10 (airavata) 01/01: Merge pull request #486 from ganning127/fixes-for-wed ganning
2025/04/10 (airavata) branch Agent-HTML-Support created (now 6acef072af) dimuthuupe
2025/04/10 (airavata) branch cybershuttle-staging updated: Meta scheduling behavior for agent launch dimuthuupe
2025/04/09 (airavata) branch cybershuttle-staging updated (6e5d934534 -> e90cb7b30f) yasith
2025/04/09 (airavata) branch cybershuttle-staging updated: updated the hub data folder and included pip packages lahirujayathilake
2025/04/09 (airavata) branch cybershuttle-staging updated: bump python sdk version to 2.0.9 yasith
2025/04/09 (airavata) 01/01: Merge pull request #487 from apache/Agent-HTML-Support yasith
2025/04/09 (airavata) branch cybershuttle-staging updated: update catalog data in DevDataInitiializer yasith
2025/04/09 (airavata) branch cybershuttle-staging updated: included ipywidgets for hub user containers lahirujayathilake
2025/04/09 (airavata) 01/01: Support for HTML and JS support for magic output dimuthuupe
2025/04/08 (airavata) branch cybershuttle-staging updated: display version when loading airavata_jupyter_magic. add --use parameter to pass allowed resources. move default variables around. add %restart_runtime to magic detector, show %stat_runtime command in the display message. yasith
2025/04/08 (airavata) 01/06: Changed the uploading file size in enveomics gateway yasith
2025/04/08 (airavata) branch cybershuttle-staging updated: update DevDataInitializer projects/paths, update the application.yml bundled with research-service. yasith
2025/04/08 (airavata) branch dependabot/maven/modules/computer-resource-monitoring-service/org.quartz-scheduler-quartz-2.3.2 updated (bd485b66f2 -> f424000456) github-bot
2025/04/08 (airavata) 01/01: Merge pull request #485 from ganning127/new-features yasith
2025/04/08 (airavata) branch dependabot/maven/modules/airavata-metascheduler/metadata-analyzer/org.quartz-scheduler-quartz-2.3.2 updated (8c4732dacc -> 1833e74d7d) github-bot
2025/04/08 (airavata) branch master updated (3420f70e16 -> 619578bf19) yasith
2025/04/08 (airavata) 01/01: Merge pull request #468 from riccog/master yasith
2025/04/08 (airavata) branch cybershuttle-staging updated (4952fadca2 -> f6251e9b34) yasith
2025/04/08 (airavata) branch cybershuttle-staging updated: update projects in research-service DevDataInitializer. yasith
2025/04/08 (airavata) branch auroraMesosIntegration deleted (was bf5d8c7964) yasith
2025/04/08 (airavata) branch nextcloud deleted (was 2bbfd8cdee) yasith
2025/04/08 (airavata) branch master-staging-merge deleted (was e61bcbb9d3) yasith
2025/04/08 (airavata) branch cybershuttle-staging updated: fix sdk bugs and agent bugs yasith
2025/04/08 (airavata) branch cybershuttle-staging updated: handle empty conda/pip deps, fix agent issues yasith
2025/04/07 (airavata) branch airavata-3287 deleted (was 8f09ec2afb) yasith
2025/04/07 (airavata) branch workflow-support deleted (was 4ea83c8f48) yasith
2025/04/07 (airavata) branch new-workflow-design deleted (was 509f2037ea) yasith
2025/04/07 (airavata) branch cybershuttle-staging updated: move mktemp from agent.sh into airavata-agent yasith
2025/04/07 (airavata) branch cybershuttle-staging updated: fix issues in agent/sdk for creating custom environments. update agent deployment scripts yasith
2025/04/07 (airavata) branch airavata-gov-registry deleted (was b6e07d7ba9) yasith
2025/04/07 (airavata) branch grouper-integration deleted (was 3d5af1950f) yasith
2025/04/07 (airavata) branch airavata-3282 deleted (was d08780b44a) yasith
2025/04/07 (airavata) branch deprecated-gfac-modules deleted (was 1e2f784a71) yasith
2025/04/07 (airavata) branch data-model-pre-1.0-discussion deleted (was 3f216348fb) yasith
2025/04/07 (airavata) branch airavata-docker deleted (was c139d656c5) yasith
2025/04/07 (airavata) 04/06: update AgentManagementHandler to send libraries, pip, and mounts in the Agent launch request. yasith
2025/04/07 (airavata) branch cybershuttle-staging updated (b212d69258 -> 21d1de0226) yasith
2025/04/07 (airavata) 06/06: Cybershuttle.org homepage copy dimuthuupe
2025/04/07 (airavata) branch cybershuttle-staging updated (fcb0c50670 -> b212d69258) dimuthuupe
2025/04/07 (airavata) 04/06: Homepage + redirecting logins dimuthuupe
2025/04/07 (airavata) 05/06: Condense to single resource page + allow unauthenticated routes dimuthuupe
2025/04/07 (airavata) 03/06: Support logout dimuthuupe
2025/04/07 (airavata) 01/06: refactoring UI and responsive changes dimuthuupe
2025/04/05 (airavata) branch cybershuttle-staging updated: dev authz token filter for development lahirujayathilake
2025/04/05 (airavata) branch cybershuttle-staging created (now 12435359d0) lahirujayathilake
2025/04/04 (airavata) 04/10: add kernel restart functionality to agent service and agent dimuthuupe
2025/04/04 (airavata) 01/10: point to same agent-communication.proto dimuthuupe
2025/04/04 (airavata) 10/10: make remote cell execution responsive. bump version to 2.0.6 dimuthuupe
2025/04/04 (airavata) 08/10: update notebooks dimuthuupe
2025/04/04 (airavata) 06/10: fix bugs in python sdk after base image / api changes dimuthuupe
2025/04/04 (airavata) 07/10: update sdk and agent service to accep yml file and dependencies. dimuthuupe
2025/04/04 (airavata) 09/10: bump python sdk version to 2.0.5.post2 dimuthuupe
2025/04/04 (airavata) 03/10: refine agent.go, fix bugs dimuthuupe
2025/04/04 (airavata) 05/10: update Makefiles and bump airavata python sdk to 2.0.5 dimuthuupe
2025/04/04 (airavata) branch cybershuttle-staging updated (e77eab862b -> fcb0c50670) dimuthuupe
2025/04/04 (airavata) branch agent-framewok-refactoring updated: dynamic data mounts for different cs images lahirujayathilake
2025/04/04 (airavata) 02/21: move self-signed certs to a single location lahirujayathilake
2025/04/03 (airavata) branch cybershuttle-staging updated: renamed the file to fix npm run build lahirujayathilake
2025/04/03 (airavata) branch cybershuttle-staging updated: Authentication for Research Portal (#481) lahirujayathilake
2025/04/03 (airavata) branch cybershuttle-staging updated: configurable allowed origin for research service lahirujayathilake
2025/04/03 (airavata) branch cybershuttle-staging updated: fixed the thrift client issue, cannot reuse the client connection for multiple calls lahirujayathilake
2025/04/02 (airavata) branch cybershuttle-staging updated: rhub session impl and some refactoring lahirujayathilake
2025/04/01 (airavata) branch cybershuttle-staging updated: Allow file tree exploring & handle rate limit error lahirujayathilake
2025/03/31 (airavata) branch cybershuttle-staging updated: Backend integration with portal lahirujayathilake
2025/03/31 (airavata) branch cybershuttle-staging updated: Use StoragePath from Properties in AgentManagementHandler lahirujayathilake
2025/03/31 (airavata) branch cybershuttle-staging updated: File tree added to ProjectDetails.tsx lahirujayathilake
2025/03/31 (airavata) branch cybershuttle-staging updated: spawn containers with the given project, reattach to existing sessions, service updates, and data initializations lahirujayathilake
2025/03/31 (airavata) branch cybershuttle-staging updated: initialize user and changes to rhub service classes lahirujayathilake
2025/03/31 (airavata) branch cybershuttle-staging updated: disable authz token verification in dev mode lahirujayathilake
2025/03/31 (airavata) branch cybershuttle-staging updated: session entity impl and entity modifications lahirujayathilake
2025/03/31 (airavata) branch cybershuttle-staging updated: clone the repo in to the work directory and grant the right permissions lahirujayathilake
2025/03/31 (airavata) branch agent-framewok-refactoring updated: updated notebook lahirujayathilake
2025/03/31 (airavata) branch agent-framewok-refactoring updated: updated the notebook and docker files lahirujayathilake
2025/03/31 (airavata) branch cybershuttle-staging updated: jupyterhub instance to show sample notebooks lahirujayathilake
2025/03/30 (airavata) 01/04: Setup complete lahirujayathilake
2025/03/30 (airavata) 04/04: Pull multiple resources lahirujayathilake
2025/03/30 (airavata) 03/04: Add support for ModelResource lahirujayathilake
2025/03/30 (airavata) branch cybershuttle-staging updated (20745efd0e -> 1ce60a6253) lahirujayathilake
2025/03/30 (airavata) 02/04: Basic API implementation working lahirujayathilake
2025/03/30 (airavata) branch cybershuttle-staging updated: authz token filtering and extracting username for the hub lahirujayathilake
2025/03/30 (airavata) branch cybershuttle-staging updated: global exception handler and boiler template for spinning up a new JL cloning a git repo and mounting ro volume lahirujayathilake
2025/03/30 (airavata) branch cybershuttle-staging updated: relative dataset path for the spawner lahirujayathilake
2025/03/30 (airavata) branch cybershuttle-staging updated: research hub configurations and compose files lahirujayathilake
2025/03/30 (airavata) branch cybershuttle-staging updated: entity classes and structure for research framework lahirujayathilake
2025/03/30 (airavata) branch cybershuttle-staging updated: add research portal lahirujayathilake
2025/03/29 (airavata) 01/01: initial research framework lahirujayathilake
2025/03/28 (airavata) branch cybershuttle-dev updated: move portal to research-framework lahirujayathilake
2025/03/28 (airavata) branch cybershuttle-dev updated: initial research framework lahirujayathilake
2025/03/27 (airavata) branch master updated: ide-integration docker-compose changes lahirujayathilake
2025/03/26 (airavata) 09/21: change protobuf plugin to a maintained one lahirujayathilake
2025/03/26 (airavata) 21/21: cleanup code. add placeholders for job monitor email/pw in airavata-server.properties lahirujayathilake
2025/03/22 (airavata) 07/21: move docker-compose file to .devcontainer lahirujayathilake
2025/03/22 (airavata) branch cybershuttle-dev updated (45243c04e4 -> 22be98dcd9) lahirujayathilake
2025/03/22 (airavata) 12/21: fix pom issues when running in devcontainer lahirujayathilake
2025/03/22 (airavata) 19/21: get hibernate orm to validate against test db. manually specify catalog for conflicting entities. lahirujayathilake
2025/03/22 (airavata) 20/21: fix issues with helix participant and job engine starter lahirujayathilake
2025/03/22 (airavata) 06/21: rename devcontainer to Airavata lahirujayathilake
2025/03/22 (airavata) 17/21: parametrize pom versions. add maven-enforcer rule for dependency convergence and fix version issues. lahirujayathilake
2025/03/22 (airavata) 10/21: update rabbitmq and proto versions, fix proto path in agent-service lahirujayathilake
2025/03/22 (airavata) 05/21: add AF2Complex notebook lahirujayathilake
2025/03/22 (airavata) 08/21: bump all jdk deps to 17. get devcontainer to working state. add launch.json for vscode integration. add openjpa runtimeoptimization tag to persistence.xml. bump mysql connector to 8.0.31. add dns tags to keystore generation script (browser https compatibility), move keystores to top-level and add build-time copy to project resources. fix Serializable warning in UserPK.java lahirujayathilake
2025/03/22 (airavata) 15/21: migrate javax.mail to jakarta.mail to fix email-monitor bug. exclude conflicting angus-mail dependency. add missing @Deprecated tags. lahirujayathilake
2025/03/22 (airavata) 14/21: simplify devcontainer. unify maven-compiler plugin version. lahirujayathilake
2025/03/22 (airavata) 18/21: migrate openjpa to hibernate, update pool and dbcp deps to pool2 and dbcp2. lahirujayathilake
2025/03/22 (airavata) 11/21: fix generated protos unused issue lahirujayathilake
2025/03/22 (airavata) 04/21: updated devcontainer and compose for easy use in vscode lahirujayathilake
2025/03/22 (airavata) 03/21: create devcontainer.json and integrate with docker-compose file. fix bugs. lahirujayathilake
2025/03/19 (airavata) branch agent-framewok-refactoring updated: multi server jupyterhub config lahirujayathilake
2025/03/18 (airavata) branch agent-framewok-refactoring updated: jupyterhub config file to support ro:data and wr:code lahirujayathilake
2025/03/18 (airavata) 02/03: excluded logback from file service lahirujayathilake
2025/03/18 (airavata) 01/03: bump version zookeeper and kafka lahirujayathilake
2025/03/18 (airavata) branch cybershuttle-dev updated (5097dd7196 -> 45243c04e4) lahirujayathilake
2025/03/18 (airavata) 03/03: jobmanager configs and included registry server properties for real-time monitor lahirujayathilake
2025/03/15 (airavata) 14/31: bump version to 0.0.16 add AlphaFold2 and Gaussian applications update realm from 10000000 -> default add GROMACS and AMBER to MD SDK lahirujayathilake
2025/03/15 (airavata) branch cybershuttle-dev updated (a3785536c7 -> 5097dd7196) lahirujayathilake
2025/03/15 (airavata) 29/31: updated the agent dependencies lahirujayathilake
2025/03/15 (airavata) 09/31: improve auth flow, add python code invocation, add plan crud apis and file ul/dl apis, reduce settings.ini deps, fix bugs lahirujayathilake
2025/03/13 (airavata) branch master updated: Changed the uploading file size in enveomics gateway eroma
2025/03/11 (airavata) 04/31: update data tar and analysis script lahirujayathilake
2025/03/11 (airavata) 30/31: gkeyll agent image and notebook sample lahirujayathilake
2025/03/11 (airavata) 13/31: fix bug in code execution, remove jupyter kernel start from agent add support to cold-start analysis agents reset changes to sftp_file_handling_client update notebooks remove verbose log from remote code execution separate python env creation and code execution steps. always return stdout+err for command/script executions lock agent to python 3.12 and update pyproject.toml update file listing and python execution cmds lahirujayathilake
2025/03/11 (airavata) 08/31: initial experiment sdk implementation lahirujayathilake
2025/03/11 (airavata) 03/31: temp commit to get cyberfaces meeting poc lahirujayathilake
2025/03/11 (airavata) 26/31: refine code flow in airavata_jupyter_magic. bump version to 1.0.5, update notebook, fix bugs lahirujayathilake
2025/03/11 (airavata) 17/31: refine Makefiles, move app-scripts to agent-framework/, fix bugs in agent.go and sample Dockerfile lahirujayathilake
2025/03/11 (airavata) 31/31: updated the gkeyll notebook script lahirujayathilake
2025/03/11 (airavata) 20/31: add type-hinting imports to __init__ files lahirujayathilake
2025/03/11 (airavata) 27/31: updated notebooks lahirujayathilake
2025/03/11 (airavata) 28/31: rename platform x86_64 -> amd64. fix issues in cyberfaces dockerfile. update notebooks. move environment files. lahirujayathilake
2025/03/11 Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
2025/03/11 (airavata) 10/31: venv support for agent, update notebooks, show tables as pandas df, update dir refs, fix bugs. lahirujayathilake
2025/03/10 (airavata) 07/31: revise jupyterhub spawned notebooks, add makefiles lahirujayathilake
2025/03/10 (airavata) 05/31: add airavata magics to dev-tools/, make airavata-agent/ build generic lahirujayathilake
2025/03/10 (airavata) 01/31: CyberFaCES docker file lahirujayathilake
2025/03/10 (airavata) 22/31: enabled micromamba base when starting the kernel lahirujayathilake
2025/03/10 (airavata) branch master updated (c965eb82e5 -> 5f42822a16) lahirujayathilake
2025/03/10 (airavata) 12/31: add pre-submission validator, update storage dir, take CONNECTION_SVC_URL and FILEMGR_SVC_URL from settings.ini, cleanup runtime.py, add fallback apis to airavata.py, rearrange files, setup file ul/dl apis, improve ux, update notebooks, add agent scripts, refine code, fix bugs lahirujayathilake
2025/03/10 (airavata) 02/31: add file ops to jupyter magics, cleanup code, update agent.sh lahirujayathilake
2025/03/10 (airavata) 15/31: choose group/project from API, silent plan launch, add_replica() -> create_task(), display task state, planid and taskid, improve messaging lahirujayathilake
2025/03/10 (airavata) 21/31: cleanup imports, fix bugs found by type checker lahirujayathilake
2025/03/10 (airavata) 23/31: fix bugs in airavata-jupyter-magic package lahirujayathilake
2025/03/10 (airavata) 16/31: add back kernel launcher to agent lahirujayathilake
2025/03/10 (airavata) 24/31: fix dependency issue in cyberfaces agent lahirujayathilake
2025/03/10 Error while running features feature from refs/heads/master:.asf.yaml in airavata! Apache Infrastructure
2025/03/10 (airavata) 11/31: make settings.ini lean, add runtime picker {by cluster, category}. change agent base dir. lahirujayathilake
2025/03/04 Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
2025/03/04 (airavata) branch cybershuttle-dev updated: gkeyll agent image and notebook sample lahirujayathilake
2025/03/04 Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
2025/03/04 (airavata) branch cybershuttle-dev updated: updated the agent dependencies lahirujayathilake
2025/03/03 (airavata) branch cybershuttle-dev updated (9a02f2faf3 -> 9d696d9d4b) lahirujayathilake
2025/03/03 (airavata) 05/06: updated notebooks lahirujayathilake
2025/03/03 (airavata) 01/06: fix bugs in airavata-jupyter-magic package lahirujayathilake
2025/03/03 (airavata) 04/06: refine code flow in airavata_jupyter_magic. bump version to 1.0.5, update notebook, fix bugs lahirujayathilake
2025/03/03 Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
2025/03/03 (airavata) 06/06: rename platform x86_64 -> amd64. fix issues in cyberfaces dockerfile. update notebooks. move environment files. lahirujayathilake
2025/03/03 (airavata) 02/06: fix dependency issue in cyberfaces agent lahirujayathilake
2025/02/28 (airavata-custos) branch master updated: User portal page API and UI changes lahirujayathilake
2025/02/28 (airavata-custos) branch master updated: Added patch functionality for groups (#415) lahirujayathilake
2025/02/28 (airavata-custos) branch master updated: update installation instructions (#414) lahirujayathilake
2025/02/27 (airavata-data-catalog) branch main updated: Pagination support lahirujayathilake
2025/02/26 Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
2025/02/26 (airavata) 09/14: add back kernel launcher to agent lahirujayathilake
2025/02/26 (airavata) branch cybershuttle-dev updated (5a1ce93b2e -> b7f8a2b3a2) lahirujayathilake
2025/02/26 (airavata) 10/14: refine Makefiles, move app-scripts to agent-framework/, fix bugs in agent.go and sample Dockerfile lahirujayathilake
2025/02/26 (airavata) 08/14: choose group/project from API, silent plan launch, add_replica() -> create_task(), display task state, planid and taskid, improve messaging lahirujayathilake
2025/02/26 (airavata) 05/14: add pre-submission validator, update storage dir, take CONNECTION_SVC_URL and FILEMGR_SVC_URL from settings.ini, cleanup runtime.py, add fallback apis to airavata.py, rearrange files, setup file ul/dl apis, improve ux, update notebooks, add agent scripts, refine code, fix bugs lahirujayathilake
2025/02/26 (airavata) 07/14: bump version to 0.0.16 add AlphaFold2 and Gaussian applications update realm from 10000000 -> default add GROMACS and AMBER to MD SDK lahirujayathilake
2025/02/26 (airavata) 02/14: improve auth flow, add python code invocation, add plan crud apis and file ul/dl apis, reduce settings.ini deps, fix bugs lahirujayathilake
2025/02/26 (airavata) 14/14: cleanup imports, fix bugs found by type checker lahirujayathilake
2025/02/26 (airavata) 03/14: venv support for agent, update notebooks, show tables as pandas df, update dir refs, fix bugs. lahirujayathilake
2025/02/26 (airavata) 06/14: fix bug in code execution, remove jupyter kernel start from agent add support to cold-start analysis agents reset changes to sftp_file_handling_client update notebooks remove verbose log from remote code execution separate python env creation and code execution steps. always return stdout+err for command/script executions lock agent to python 3.12 and update pyproject.toml update file listing and python execution cmds lahirujayathilake
2025/02/26 (airavata) 13/14: add type-hinting imports to __init__ files lahirujayathilake
2025/02/26 (airavata) 01/14: initial experiment sdk implementation lahirujayathilake
2025/02/26 (airavata) 04/14: make settings.ini lean, add runtime picker {by cluster, category}. change agent base dir. lahirujayathilake
2025/02/25 (airavata) branch master updated (d8bcee8ece -> c965eb82e5) lahirujayathilake
2025/02/25 Error while running features feature from cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
2025/02/25 (airavata) branch cybershuttle-dev created (now c965eb82e5) lahirujayathilake
2025/02/25 Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
2025/02/25 Error while running features feature from refs/heads/cybershuttle-dev:.asf.yaml in airavata! Apache Infrastructure
2025/02/25 (airavata) branch cybershuttle-dev updated: CyberFaCES docker file lahirujayathilake
2025/02/25 Error while running features feature from refs/heads/cyberfaces:.asf.yaml in airavata! Apache Infrastructure