Dear All, I want to do a morph using LSQMAN's internal coordinates, but in doing so I lose the C, N, and O atoms from the PDB file. Unfotunately PyMOL needs these to make pretty cartoons. I think I can use Coot to put the N, C, and O atoms back by manually mutating the residues, but this sounds like a pain for a whole bunch of intermediate PDB files. Can some brilliant python programmers suggest a way I might script this so as to get my peptide bonds back for PyMOL?
any advice greatly appreciated, Richard Baxter
