Hi Ed (and COOT list): I’ve put updated info files here: http://scottlab.ucsc.edu/fink/finkupdate/
I’m trying to get these into fink as soon as possible, BUT there are two show-stopper problems: (1) The old refmac I have won’t compile with the newer versions of gcc, and we really need a new version of this anyway for coot. (Coot only requires refmac at runtime, so it can use whatever version you might have with CCP4). If anyone knows of a more recent version that is available for unrestricted download and installation, please let me know. (2) Coot itself requires a newer version of gtk+2 than what fink has, and they are objecting that the newer version of gtk+2 has bugs in it that break other programs, so I am stuck on a pre-release version of coot. None of this is at all satisfactory, and I apologize. I haven’t yet had a chance to download the most recent CCP4 package, but from what I understand, it has the latest coot (and refmac), so if you need the new version, I suggest you do that. If we can’t have a more recent version of coot in fink vs. ccp4, and can’t have refmac, it kind of makes it pointless to maintain coot in fink. Bill William G. Scott Director, Program in Biochemistry and Molecular Biology Professor, Department of Chemistry and Biochemistry and The Center for the Molecular Biology of RNA University of California at Santa Cruz Santa Cruz, California 95064 USA > On Apr 24, 2020, at 10:24 AM, William G. Scott <[email protected]> wrote: > > Hi Ed: > > Briefly, I need to update the package. > > Less briefly, I need to change to gcc9, which is easy, and I need to update > to the latest version of coot, 0.9, which is proving to be a nightmare. > > I need to go teach a class and will then get back to you with something I > hope will work. > > Bill > > PS: If you just want the latest coot, it looks like the latest version of > CCP4, just released, has it. They are ahead of me. > > > > > William G. Scott > Director, Program in Biochemistry and Molecular Biology > Professor, Department of Chemistry and Biochemistry > and The Center for the Molecular Biology of RNA > University of California at Santa Cruz > Santa Cruz, California 95064 > USA > > > >> On Apr 24, 2020, at 8:57 AM, Edward Miller <[email protected]> wrote: >> >> Hi Professor Scott, >> >> I'm trying to install coot via fink on OS X 10.15. This is a clean fink >> install, so I completely blasted my /sw directory prior to this. >> >> The installation is looking for a gcc5 package: >> >> Can't resolve dependency "gcc5-shlibs (>= 5.1.0-2)" for package >> "coot-0.8.9-2" (no matching packages/versions found) >> Exiting with failure. >> >> Is this dependency correct? >> >> Thanks for your help and for contributing to crystallography on os x for all >> these years. >> >> Ed Miller > ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=COOT&A=1
