Dear all,

On Fri, Jul 10, 2020 at 03:56:28PM +0100, Andrew Sharff wrote:
> I would love to try today's revision - where can I download a MacOS binary
> from? You only have linux binaries on your website - we only see the
> problems on MacOS.

Following on from Andrew's question: I must confess that I'm
completely confused by the way one is supposed to get a working Coot
version up and running. What is /the/ official way of getting /the/
official Coot version up and running?

According to

  https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/

the official Coot site is

  https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/

where I can see:

  [Download Binaries]: 
    release:      0.8.9.1 from April 2018
    pre-releases: 0.8.9.3 from January 2020

  [Latest Builds]:
    0.8.9.2 from January 2019

  [Build Coot from scratch]:
    pointing to 
https://raw.githubusercontent.com/pemsley/coot/refinement/build-it

    that script (5.35 20190401) has things like

      if test "$OS" = Darwin ; then
        . /usr/local/ccp4-6.0.2/bin/ccp4.setup-sh
      fi

    which suggests a fairly specific setup. Is this nevertheless the
    script one should use? Will/Should it work on modern Linux (Centos
    7/8, Ubuntu 18.04/20.04, Debian 9/10 etc) and/or OsX?

The Github link above suggests that maybe

  https://github.com/pemsley/coot

is the correct place to find Coot binaries and/or installation
instructions. The main page there points me to the "Coot Development
Blog" at

  https://pemsley.github.io/coot/

which seems to report mainly on new developments. The other link is
again (back) to the MRC/LMB page described above.

Is it maybe the procedure described in INSTALL (from August 2016) that
one should follow? Or one of

  build-it-gtk2 (July 2013)
  build-it-gtk2-Darwin (April 2008)
  build-it-gtk2-simple (September 2016)

Is one of those pages maybe still relevant:

  
https://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Custom_building_Coot_from_source_code
  http://scottlab.ucsc.edu/xtal/wiki/index.php/Stand-Alone_Coot

or the links from the "Coot FAQ":

  https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/docs/coot-faq.html

namely

  2 Building and Installing
    2.1 I have Mac OS X. How do I get coot?
    2.2 How do I make the binary release work?
    2.3 Which binary tar file shall I use?
      2.3.1 Coot on 64-bit RHEL 6
      2.3.2 Additional Note for SuSE 9.1
      2.3.3 Additional Note for SuSE 9.3
      2.3.4 Additional Note for SuSE 10.1

Obviously, Coot is a highly sophisticated software package with a lot
of external dependencies - so a big "Thank you" to anyone providing
pre-compiled binaries of Coot (especially CCP4). If someone has a
meaningful set of instructions to compile Coot starting from the
Github sources (so one can follow Paul's advice to test the latest
version), it would be very much appreciated!

Thanks a lot for any hints/remarks!

Cheers

Clemens

########################################################################

To unsubscribe from the COOT list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1

This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list 
hosted by www.jiscmail.ac.uk, terms & conditions are available at 
https://www.jiscmail.ac.uk/policyandsecurity/

Reply via email to