Hello Bryan,
On 05/01/2021 22:31, Bryan Lepore wrote:
Greetings - I am lost getting coot to run (see below the signature for
fine details). I have started `apt install` in piecemeal fashion and
am getting nowhere (also see below for details), e.g. installing
libguile-3.0 but it is already installed. This is usually a sign of
user error, and having looked around the usual places, now I must try
asking a question before causing more trouble :
Are there specific environment variables coot needs to know about or
have set upon startup?
No.
some details:
binary
: coot-0.9.4-pre-revision-10190-binary-Linux-x86_64-ubuntu-16.04.6-python-gtk2.tar.gz
Linux 5.4.0-59-generic #65-Ubuntu SMP Thu Dec 10 12:01:51 UTC 2020
x86_64 GNU/Linux
Description: Ubuntu 20.04.1 LTS
Codename: focal
full error output in shell:
CLIBD_MON not set using COOT_REFMAC_LIB_DIR
[redacted]/coot-Linux-x86_64-ubuntu-16.04.6-pre-release-gtk2-python/libexec/coot-bin:
error while loading shared libraries: libpng12.so.0: cannot open
shared object file: No such file or directory
linux-vdso.so.1 (0x00007ffd7ad8c000)
libguile.so.17 => not found
libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0
(0x00007fbf6921c000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fbf6902a000)
/lib64/ld-linux-x86-64.so.2 (0x00007fbf69264000)
undefined symbol: scm_boot_guile
([redacted]/coot-Linux-x86_64-ubuntu-16.04.6-pre-release-gtk2-python/bin/guile)
undefined symbol: scm_shell
([redacted]/coot-Linux-x86_64-ubuntu-16.04.6-pre-release-gtk2-python/bin/guile)
guile: error while loading shared libraries: libguile.so.17: cannot
open shared object file: No such file or directory
failed to launch the crash catcher - bad guile
This is a frustration all round.
Coot on ubuntu links the system png library
libpng12-0:amd64: /lib/x86_64-linux-gnu/libpng12.so.0
I guess you need to install that.
You can try
$ coot --check-libs
Paul.
########################################################################
To unsubscribe from the COOT list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1
This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list
hosted by www.jiscmail.ac.uk, terms & conditions are available at
https://www.jiscmail.ac.uk/policyandsecurity/
