Dear Xavier, for the nomenclature error there is this fix.
add this to your startup-script
set_nomenclature_errors_on_read("ignore")
I would be also interested to answer the first issue.
Br, Georg.
Am 28.04.2022 um 19:22 schrieb Xavier Brazzolotto:
Dear Phenix and Coot users and developers
I've recently observed a kind of conflict between Phenix and Coot.
I am using Phenix v1.20.1-4487 and Coot 0.9.8.1 from thee CCP4 8.0
suite under macOS Monterey (v12.3.1).
If I launch Coot through Phenix via the « Open in Coot » tab (the path
to Coot has been defined in Phenix preferences), Coot opens correctly
and displays the structure with the « Connected to Phenix tab".
However if I wand to do some RSR then, I get this error message.
In parallel if I use Coot by itself (launched through the terminal),
RSR works well… but upon opening Coot states that there is some
"Nomenclature errors ».
I wonder if there would be some conflict between residue libraries
between Phenix and Coot ?
Just to leet you know I’ve also recently tried to install/comlplie the
Coot v1 pre-version to have a loot at it and I do also have libccp4
installed in my Homebrew. Maybe everything comes from that ?
Xavier
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