FYI while I'm still going through dependencies from Ubuntu 20.04 packages, I
also tried CentOS 7 again by installing guile-devel to circumvent the script's
auto-build of GUILE, and it builds Coot successfully. However, when I launch it
I see a splash screen and the following messages, after which Coot exits with
error.
I'll try to move forward with Ubuntu 20.04, but if support for RHEL/CentOS 7 is
restored it would be very helpful. Thanks!
DEBUG:: setting OpenGL required version to 3 3
INFO:: GL Version: 3.3.0 NVIDIA 510.47.03
INFO:: GL Shading Language Version: 3.30 NVIDIA via Cg compiler
INFO:: GL Renderer: Quadro M4000/PCIe/SSE2
INFO:: GL Vendor: NVIDIA Corporation
Shader compile meshes-with-shadows.shader success
Shader compile meshes-shadow-map.shader success
Shader compile meshes-for-ssao.shader success
Shader compile texture-meshes-for-ssao.shader success
Shader compile texture-meshes-with-shadows.shader success
Shader compile texture-meshes-shadow-map.shader success
Shader compile texture-meshes.shader success
Shader compile shadow-map-image-texture.shader success
Shader compile 9.ssao_geometry.shader success
Shader compile 9.ssao.shader success
Shader compile 9.ssao_blur.shader success
Shader compile outline-of-active-residue.shader success
Shader compile map.shader success
Shader compile draw-map-cap.shader success
Shader compile model.shader success
Shader compile central-cube.shader success
Shader compile central-cube.shader success
Shader compile hud-text.shader success
Shader compile hud-bars.shader success
Shader compile hud-labels.shader success
Shader compile hud-image-texture.shader success
Shader compile atom-label.shader success
Shader compile moleculestotriangles.shader success
Shader compile lines.shader success
Shader compile lines-pulse.shader success
Shader compile rama-balls.shader success
Shader compile particles.shader success
Shader compile instanced-objects.shader success
Shader compile hud-geometry-tooltip-text.shader success
Shader compile happy-face-residue-markers.shader success
Shader compile ligand-view.shader success
Shader compile model-as-mesh.shader success
Shader compile symmetry-atoms-lines.shader success
Shader compile hud-bars.shader success
Shader compile rama-plot-axes-and-ticks.shader success
Shader compile rama-plot-phi-psi-markers.shader success
Shader compile hud-lines.shader success
Shader compile meshes.shader success
Shader compile texture-meshes.shader success
Shader compile effects.shader success
Shader compile screen.shader success
Shader compile blur-x.shader success
Shader compile blur-y.shader success
Shader compile depth-of-field.shader success
Shader compile blur.shader success
Shader compile rotation-centre-cross-hairs-for-ssao.shader success
GL ERROR:: Shader::set_int_for_uniform() "screen.shader" B glUniform1i for
uniform screenTexture loc: 2 value: 0 err 1282
GL ERROR:: Shader::set_int_for_uniform() "screen.shader" B glUniform1i for
uniform screenDepth loc: 1 value: 1 err 1282
GL ERROR:: Shader::set_int_for_uniform() "blur.shader" B glUniform1i for
uniform screenTexture loc: 4 value: 0 err 1282
GL ERROR:: Shader::set_int_for_uniform() "blur.shader" B glUniform1i for
uniform screenDepth loc: 3 value: 1 err 1282
Shader compile 9.ssao_geometry.shader success
Shader compile 9.ssao.shader success
Shader compile 9.ssao_blur.shader success
debug:: generating 64 SSAO kernel samples
Python path configuration:
PYTHONHOME =
'/data/local/Fiorin/build/autobuild/coot-Linux-x86_64-centos-7-gtk3'
PYTHONPATH = (not set)
program name = 'python3'
isolated = 0
environment = 1
user site = 1
import site = 1
sys._base_executable = '/usr/bin/python3'
sys.base_prefix =
'/data/local/Fiorin/build/autobuild/coot-Linux-x86_64-centos-7-gtk3'
sys.base_exec_prefix =
'/data/local/Fiorin/build/autobuild/coot-Linux-x86_64-centos-7-gtk3'
sys.platlibdir = 'lib'
sys.executable = '/usr/bin/python3'
sys.prefix =
'/data/local/Fiorin/build/autobuild/coot-Linux-x86_64-centos-7-gtk3'
sys.exec_prefix =
'/data/local/Fiorin/build/autobuild/coot-Linux-x86_64-centos-7-gtk3'
sys.path = [
'/data/local/Fiorin/build/autobuild/coot-Linux-x86_64-centos-7-gtk3/lib/python39.zip',
'/data/local/Fiorin/build/autobuild/coot-Linux-x86_64-centos-7-gtk3/lib/python3.9',
'/data/local/Fiorin/build/autobuild/coot-Linux-x86_64-centos-7-gtk3/lib/python3.9/lib-dynload',
]
Fatal Python error: init_fs_encoding: failed to get the Python codec of the
filesystem encoding
Python runtime state: core initialized
ModuleNotFoundError: No module named 'encodings'
Current thread 0x00007f1f23057b00 (most recent call first):
<no Python frame>
--- framebuffer destructor - deleting framebuffer and textures
"effects-framebuffer"
--- framebuffer destructor - deleting framebuffer and textures ""
--- framebuffer destructor - deleting framebuffer and textures ""
--- framebuffer destructor - deleting framebuffer and textures
"SSAO-gBuffer-framebuffer"
--- framebuffer destructor - deleting framebuffer and textures "blur"
--- framebuffer destructor - deleting framebuffer and textures "new-blur"
--- framebuffer destructor - deleting framebuffer and textures "blur-y"
--- framebuffer destructor - deleting framebuffer and textures "blur-x"
--- framebuffer destructor - deleting framebuffer and textures
"screen/occlusion"
. ------ Coot crashed - trying to diagnose -----
ldd -r on guile gives:
linux-vdso.so.1 => (0x00007ffc86abe000)
libguile-2.2.so.1 =>
/data/local/build/autobuild/Linux-kurtz.nhlbi.nih.gov-gtk3/lib/libguile-2.2.so.1
(0x00007f2eef9c9000)
libgc.so.1 =>
/data/local/build/autobuild/Linux-kurtz.nhlbi.nih.gov-gtk3/lib/libgc.so.1
(0x00007f2eef75c000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f2eef540000)
libffi.so.6 =>
/data/local/build/autobuild/Linux-kurtz.nhlbi.nih.gov-gtk3/lib/../lib64/libffi.so.6
(0x00007f2eef336000)
libunistring.so.2 =>
/data/local/build/autobuild/Linux-kurtz.nhlbi.nih.gov-gtk3/lib/libunistring.so.2
(0x00007f2eeefb6000)
libgmp.so.10 =>
/data/local/build/autobuild/Linux-kurtz.nhlbi.nih.gov-gtk3/lib/libgmp.so.10
(0x00007f2eeed41000)
libltdl.so.7 =>
/data/local/build/autobuild/Linux-kurtz.nhlbi.nih.gov-gtk3/lib/libltdl.so.7
(0x00007f2eeeb37000)
libdl.so.2 => /lib64/libdl.so.2 (0x00007f2eee933000)
libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00007f2eee6fc000)
libm.so.6 => /lib64/libm.so.6 (0x00007f2eee3fa000)
libc.so.6 => /lib64/libc.so.6 (0x00007f2eee02c000)
/lib64/ld-linux-x86-64.so.2 (0x00007f2eefd2c000)
libfreebl3.so => /lib64/libfreebl3.so (0x00007f2eede29000)
guile (GNU Guile) 2.2.7
Copyright (C) 2020 Free Software Foundation, Inc.
License LGPLv3+: GNU LGPL 3 or later <http://gnu.org/licenses/lgpl.html>.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
catching the crash log:
;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0
;;; or pass the --no-auto-compile argument to disable.
;;; compiling
/data/data/local/Fiorin/build/autobuild/coot-Linux-x86_64-centos-7-gtk3/share/coot/scheme/coot-crash-catcher.scm
;;; WARNING: compilation of
/data/data/local/Fiorin/build/autobuild/coot-Linux-x86_64-centos-7-gtk3/share/coot/scheme/coot-crash-catcher.scm
failed:
;;; no code for module (gtk gdk)
Backtrace:
9 (primitive-load "/data/local/Fiorin/build/autobuild/coo?")
In ice-9/eval.scm:
721:20 8 (primitive-eval (use-modules (gtk gdk) (gtk gtk) (# ?) ?))
In ice-9/psyntax.scm:
1262:36 7 (expand-top-sequence ((use-modules (gtk gdk) (gtk ?) ?)) ?)
1209:24 6 (parse _ (("placeholder" placeholder)) ((top) #(# # ?)) ?)
285:10 5 (parse _ (("placeholder" placeholder)) (()) _ c&e (eval) ?)
In ice-9/boot-9.scm:
3377:20 4 (process-use-modules _)
222:17 3 (map1 (((gtk gdk)) ((gtk gtk)) ((gui event-loop)) (#) #))
3378:31 2 (_ ((gtk gdk)))
2803:6 1 (resolve-interface _ #:select _ #:hide _ #:prefix _ # _ ?)
In unknown file:
0 (scm-error misc-error #f "~A ~S" ("no code for modu?" ?) ?)
ERROR: In procedure scm-error:
no code for module (gtk gdk)
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