Thanks Paul

I’ll also try and find the appropriate lines from build script to build an
upgraded clipper in the meantime. Guessing this is the 0.9.x series build
script you are referring to?

Thanks again
Hari



On Wed, Jun 29, 2022 at 5:37 PM Paul Emsley <pems...@mrc-lmb.cam.ac.uk>
wrote:

>
> This is primarily my mistake.  I now think that coot's configure should
> check for the version of clipper that has top8000.
>
> If it doesn't find that clipper, then Coot's configure should fail.
>
> You should never get to the make stage.
>
> I will take a look at what I need to do to make that happen (because,
> clearly, it isn't).
>
> A few days.
>
> Paul.
>
>
>
> On 27/06/2022 03:12, Paul Emsley wrote:
>
>
> That clipper is old clipper. You need the clipper from the build script.
>
> Paul.
>
>
>
> On 27/06/2022 03:10, hari jayaram wrote:
>
> Dear Paul and the coot community
> It's been 6 years since I posted on any coot forum . I saw the exciting
> news around coot-1 and am itching to dive back in.
>
> I am trying to compile coot-1 on Ubuntu 20.04
>
> After installing a series of dependencies, which I can gladly report back
> to you on...the build started without any issues. It however stopped with
> this error  --see below
> I got all the libraries including the clipper libraries from Ubuntu ( sudo
> apt-get install libclipper-dev)
>
> I wonder how to proceed past this.
>
> Thanks a tonne for your help
> Hari
>
>
> """
> /bin/bash ../libtool  --tag=CXX   --mode=compile g++
> -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"1\"
> -DPACKAGE_STRING=\"coot\ 1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\"
> -DPACKAGE=\"coot\" -DVERSION=\"1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1
> -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1
> -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1
> -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1
> -DHAVE_CXX_THREAD=1 -DHAVE_PYTHON=\"3.8\" -DHAVE_BOOST=/\*\*/
> -DHAVE_BOOST_PYTHON=/\*\*/ -I.  -I.. -DHAVE_GSL -I/usr/include
>  -DMMDB_HAS_LINK_DISTANCE   -fopenmp -DPKGDATADIR='"/usr/local/share/coot"'
>   -DUSE_LIBPNG=1 -I/usr/include/libpng16 -g -O2 -Wall -Wno-unused
>  -std=c++11 -MT residue_by_phi_psi.lo -MD -MP -MF
> .deps/residue_by_phi_psi.Tpo -c -o residue_by_phi_psi.lo
> residue_by_phi_psi.cc
> libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\"
> -DPACKAGE_VERSION=\"1\" "-DPACKAGE_STRING=\"coot 1\""
> -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\"
> -DVERSION=\"1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1
> -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1
> -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1
> -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_CXX11=1 -DHAVE_CXX_THREAD=1
> -DHAVE_PYTHON=\"3.8\" "-DHAVE_BOOST=/**/" "-DHAVE_BOOST_PYTHON=/**/" -I.
> -I.. -DHAVE_GSL -I/usr/include -DMMDB_HAS_LINK_DISTANCE -fopenmp
> -DPKGDATADIR=\"/usr/local/share/coot\" -DUSE_LIBPNG=1
> -I/usr/include/libpng16 -g -O2 -Wall -Wno-unused -std=c++11 -MT
> residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c
> residue_by_phi_psi.cc  -fPIC -DPIC -o .libs/residue_by_phi_psi.o
> residue_by_phi_psi.cc: In member function ‘void
> coot::residue_by_phi_psi::init_phi_psi_plot()’:
> residue_by_phi_psi.cc:869:37: error: ‘All2’ is not a member of
> ‘clipper::Ramachandran’
>   869 |    rama.init(clipper::Ramachandran::All2);
>       |                                     ^~~~
> residue_by_phi_psi.cc:871:41: error: ‘Pro2’ is not a member of
> ‘clipper::Ramachandran’
>   871 |    rama_pro.init(clipper::Ramachandran::Pro2);
>       |                                         ^~~~
> make[1]: *** [Makefile:1324: residue_by_phi_psi.lo] Error 1
> make[1]: Leaving directory '/home/hari-verve/coot-1/ligand'
> make: *** [Makefile:723: all-recursive] Error 1
> """
>
> On Mon, Jun 13, 2022 at 4:56 PM Paul Emsley <pems...@mrc-lmb.cam.ac.uk>
> wrote:
>
>> On 13/06/2022 18:40, Giacomo Fiorin wrote:
>> > FYI while I'm still going through dependencies from Ubuntu 20.04
>> packages, I also tried CentOS 7 again by installing guile-devel to
>> circumvent the script's auto-build of GUILE, and it builds Coot
>> successfully. However, when I launch it I see a splash screen and the
>> following messages, after which Coot exits with error.
>> >
>> > I'll try to move forward with Ubuntu 20.04, but if support for
>> RHEL/CentOS 7 is restored it would be very helpful. Thanks!
>>
>>
>> Try setting your path so that
>>
>> /data/local/Fiorin/build/autobuild/coot-Linux-x86_64-centos-7-gtk3/bin is
>> the first element
>>
>> Paul.
>>
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