Hi Martin,

I just tried with a small test db and was unable to reproduce your case, even 
with the #.
I attach the SQL and mapping file I am using as well as the output, produce 
with the command ./dump-rdf -f RDF/XML -b "http://purl.org/test/"; -o 
testMapping.owl testMapping.ttl 

As you can see in the output, it creates classes with URI of type   
<rdf:Description rdf:about="1"> (the base URI being defined as  
xml:base="http://purl.org/test/";, this would be expanded as 
http://purl.org/test/1) and classes with an absolute URI such as  
<rdf:Description rdf:about="http://purl.obolibrary.org/obo#testName1";>

Cheers,
Melanie



Attachment: testMapping.owl
Description: Binary data

Attachment: testMapping.ttl
Description: Binary data

Attachment: testd2r.sql
Description: Binary data


On 2013-06-27, at 9:42 AM, martin roberts wrote:

> Hi Melanie
> In our case we have used the second format but with the following style of url
> 
> http://purl.obolibrary.org/obo#ObjectName_@@data.code@@
> 
> I am wondering as we have used # in the uri whether Jena has taken this to be 
> wrong for the dump.  It works if I run the server but not if I use dump.
> 
> Martin
> On 27/06/2013 17:37, Melanie Courtot wrote:
>> Hi Martin,
>> 
>> Do you have a small example?
>> 
>> I use both a relative URI with d2rq:uriPattern 
>> "@@positiveData.key_ID|urlify@@" and an absolute URI with d2rq:uriPattern 
>> "http://purl.obolibrary.org/obo/@@data.code@@"; in the same mapping file, and 
>> I get the expected output, i.e. in the first case my base URI is prepended, 
>> while in the second the URI is kept as is.
>> 
>> I use dump-rdf -b "my-base-uri".
>> 
>> Cheers,
>> Melanie
>> 
>> 
>> On 2013-06-27, at 7:46 AM, martin roberts wrote:
>> 
>>> Hi
>>>   can you explain why the dump-rdf feature does not use the uriPattern
>>> properties for generate the full URI for the objects extracted, but
>>> instead uses the base uri passed in?
>>> 
>>>   Is there a way to make this work?
>>> 
>>> Martin
>>> 
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>> ---
>> Mélanie Courtot
>> Ph.D. Candidate,
>> BCCRC - Terry Fox Laboratory - 12th floor
>> 675 West 10th Avenue
>> Vancouver, BC
>> V5Z 1L3, Canada
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
> 

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