Hello! > I wonder whether the PETSc interfaces have changed again.
Sigh, I guess exactly this happened, see https://github.com/petsc/petsc/commit/569ea7c476928c4ccab5493c49720b88ce3320f4#diff-10d5cd204c8b9d29ef9bc54965f06c2ac039d4cfcdaab6a01ce027a345b9d232 I'll prepare a fix. @Emmanuel: To solve the problem, you can either use an older version of PETSc, or wait for a patch that fixes this. Best, Marc On Saturday, March 27, 2021 at 5:56:53 AM UTC-6 eya...@gmail.com wrote: > Hi Dr. Wolfgang, > > This is version 3.14 and I installed it with the following settings: > ./configure --with-cc = gcc --with-fc = gfortran --download-mpich > --download-fblaslapack --download-mumps --download-scalapack > --download-hypre --download-metis --download -parmetis --download-arpack > --download-hdf5 --download-eigen --download-ptscotch --download-suitesparse > --with-scalar-type = real --with-debugging = no > > El sábado, 27 de marzo de 2021 a la(s) 00:34:21 UTC-3, Wolfgang Bangerth > escribió: > >> >> Emmanuel, >> what's the PETSc version you have installed? I wonder whether the PETSc >> interfaces have changed again. >> >> Best >> W. >> >> On 3/27/21 12:24 AM, Emmanuel Yarleque Medina wrote: >> > Hello everyone: >> > >> > I'm trying to install deal II 9.2.0 on Ubuntu 20.04.2 LTS release with >> comands: >> > >> > cmake -DCMAKE_INSTALL_PREFIX=/usr/local -DDEAL_II_WITH_MPI=ON >> > -DPETSC_DIR=/home/hpc/petsc -DPETSC_ARCH=arch-linux2-c-opt >> > -DDEAL_II_WITH_PETSC=ON >> -DMETIS_DIR=/home/hpc/metis-5.1.0/build/Linux-x86_64 >> > -DDEAL_II_WITH_METIS=ON -DP4EST_DIR=/home/hpc/p4est/DEBUG >> > -DTRILINOS_DIR=/home/hpc/trilinos -DDEAL_II_WITH_TRILINOS=ON >> > -DDEAL_II_WITH_P4EST=ON -DTrilinos_ENABLE_EXPLICIT_INSTANTIATION=ON ../ >> > >> > and the following error happened: >> > >> > Scanning dependencies of target obj_non_matching_inst >> > [ 19%] Generating coupling.inst >> > [ 19%] Built target obj_physics_elasticity_inst >> > Scanning dependencies of target obj_sundials_debug >> > [ 19%] Built target obj_non_matching_inst >> > Scanning dependencies of target obj_numerics_debug >> > [ 19%] Building CXX object >> > source/sundials/CMakeFiles/obj_sundials_debug.dir/arkode.cc.o >> > [ 19%] Building CXX object >> > source/numerics/CMakeFiles/obj_numerics_debug.dir/data_out.cc.o >> > [ 19%] Building CXX object >> > source/sundials/CMakeFiles/obj_sundials_debug.dir/ida.cc.o >> > In file included from /home/hpc/petsc/include/petscsf.h:7, >> > from /home/hpc/petsc/include/petsc.h:12, >> > from >> > /home/hpc/dealII/dealii-9.2.0/include/deal.II/fe/fe_values.h:52, >> > from >> > /home/hpc/dealII/dealii-9.2.0/source/numerics/data_out.cc:23: >> > /home/hpc/petsc/include/petscis.h:216:47: error: expected initializer >> before >> > ‘ISColoringValue’ >> > 216 | typedef unsigned PETSC_IS_COLORING_VALUE_TYPE ISColoringValue; >> > | ^~~~~~~~~~~~~~~ >> > /home/hpc/petsc/include/petscis.h:219:65: error: ‘ISColoringValue’ has >> not >> > been declared >> > 219 | PETSC_EXTERN PetscErrorCode >> > >> ISAllGatherColors(MPI_Comm,PetscInt,ISColoringValue*,PetscInt*,ISColoringValue*[]); >> >> >> > | >> > ^~~~~~~~~~~~~~~ >> > /home/hpc/petsc/include/petscis.h:219:92: error: ‘ISColoringValue’ has >> not >> > been declared >> > 219 | PETSC_EXTERN PetscErrorCode >> > >> ISAllGatherColors(MPI_Comm,PetscInt,ISColoringValue*,PetscInt*,ISColoringValue*[]); >> >> >> > | >> > ^~~~~~~~~~~~~~~ >> > /home/hpc/petsc/include/petscis.h:221:79: error: ‘ISColoringValue’ does >> not >> > name a type; did you mean ‘ISColoringType’? >> > 221 | PETSC_EXTERN PetscErrorCode >> > ISColoringCreate(MPI_Comm,PetscInt,PetscInt,const >> > ISColoringValue[],PetscCopyMode,ISColoring*); >> > | >> > ^~~~~~~~~~~~~~~ >> > | >> > ISColoringType >> > /home/hpc/petsc/include/petscis.h:230:86: error: ‘ISColoringValue’ does >> not >> > name a type; did you mean ‘ISColoringView’? >> > 230 | PETSC_EXTERN PetscErrorCode >> > ISColoringGetColors(ISColoring,PetscInt*,PetscInt*,const >> ISColoringValue**); >> > | >> > ^~~~~~~~~~~~~~~ >> > | >> > ISColoringView >> > In file included from /home/hpc/petsc/include/petscdm.h:6, >> > from /home/hpc/petsc/include/petscdmda.h:4, >> > from /home/hpc/petsc/include/petsc.h:14, >> > from >> > /home/hpc/dealII/dealii-9.2.0/include/deal.II/fe/fe_values.h:52, >> > from >> > /home/hpc/dealII/dealii-9.2.0/source/numerics/data_out.cc:23: >> > /home/hpc/petsc/include/petscmat.h:1335:68: error: ‘ISColoringValue’ >> has not >> > been declared >> > 1335 | PETSC_EXTERN PetscErrorCode >> > MatColoringPatch(Mat,PetscInt,PetscInt,ISColoringValue[],ISColoring*); >> > | >> > ^~~~~~~~~~~~~~~ >> > [ 19%] Building CXX object >> > source/sundials/CMakeFiles/obj_sundials_debug.dir/copy.cc.o >> > [ 19%] Building CXX object >> > source/sundials/CMakeFiles/obj_sundials_debug.dir/kinsol.cc.o >> > make[2]: *** >> [source/numerics/CMakeFiles/obj_numerics_debug.dir/build.make:63: >> > source/numerics/CMakeFiles/obj_numerics_debug.dir/data_out.cc.o] Erro 1 >> > make[1]: *** [CMakeFiles/Makefile2:1882: >> > source/numerics/CMakeFiles/obj_numerics_debug.dir/all] Erro 2 >> > make[1]: ** Esperando que outros processos terminem. >> > [ 19%] Built target obj_sundials_debug >> > make: *** [Makefile:130: all] Erro 2 >> > hpc@hpc:~/dealII/dealii-9.2.0/build$ >> > >> > >> > >> > how can I resolve this error? >> > >> > Best regards, >> > >> > >> > >> > >> > -- >> > The deal.II project is located at http://www.dealii.org/ >> > < >> https://nam10.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.dealii.org%2F&data=04%7C01%7CWolfgang.Bangerth%40colostate.edu%7Cd587d0874fda4e3cec2b08d8f0ae5b89%7Cafb58802ff7a4bb1ab21367ff2ecfc8b%7C0%7C0%7C637523978960103853%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=XZzrxwNrIoXGRA7u%2BjqdoaEasOa0919yfdimTThIKz4%3D&reserved=0> >> >> >> > For mailing list/forum options, see >> > https://groups.google.com/d/forum/dealii?hl=en >> > < >> https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgroups.google.com%2Fd%2Fforum%2Fdealii%3Fhl%3Den&data=04%7C01%7CWolfgang.Bangerth%40colostate.edu%7Cd587d0874fda4e3cec2b08d8f0ae5b89%7Cafb58802ff7a4bb1ab21367ff2ecfc8b%7C0%7C0%7C637523978960113849%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=HEDF6YFE0z5TvYRnp7jZ7mD31riWnHONO9pPFJT7qY8%3D&reserved=0> >> >> >> > --- >> > You received this message because you are subscribed to the Google >> Groups >> > "deal.II User Group" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> an >> > email to dealii+un...@googlegroups.com >> > <mailto:dealii+un...@googlegroups.com>. >> > To view this discussion on the web visit >> > >> https://groups.google.com/d/msgid/dealii/a6553a48-5bf5-4d0c-9556-b652bdc3d52bn%40googlegroups.com >> >> > < >> https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgroups.google.com%2Fd%2Fmsgid%2Fdealii%2Fa6553a48-5bf5-4d0c-9556-b652bdc3d52bn%2540googlegroups.com%3Futm_medium%3Demail%26utm_source%3Dfooter&data=04%7C01%7CWolfgang.Bangerth%40colostate.edu%7Cd587d0874fda4e3cec2b08d8f0ae5b89%7Cafb58802ff7a4bb1ab21367ff2ecfc8b%7C0%7C0%7C637523978960113849%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=UqZrZuzCRb%2BmjI%2Bi1A1AOG5IE1VSdwI9vAxS%2Fy2EKwQ%3D&reserved=0>. >> >> >> >> >> -- >> ------------------------------------------------------------------------ >> Wolfgang Bangerth email: bang...@colostate.edu >> www: http://www.math.colostate.edu/~bangerth/ >> >> -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. 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