Thanks Fehling, which version of Petsc is compatible with dealii? Best regards,
Em sáb, 27 de mar de 2021 às 8:50 PM, Marc Fehling <[email protected]> escreveu: > Hello! > > > I wonder whether the PETSc interfaces have changed again. > > Sigh, I guess exactly this happened, see > https://github.com/petsc/petsc/commit/569ea7c476928c4ccab5493c49720b88ce3320f4#diff-10d5cd204c8b9d29ef9bc54965f06c2ac039d4cfcdaab6a01ce027a345b9d232 > > I'll prepare a fix. > > @Emmanuel: To solve the problem, you can either use an older version of > PETSc, or wait for a patch that fixes this. > > Best, > Marc > > > On Saturday, March 27, 2021 at 5:56:53 AM UTC-6 [email protected] wrote: > >> Hi Dr. Wolfgang, >> >> This is version 3.14 and I installed it with the following settings: >> ./configure --with-cc = gcc --with-fc = gfortran --download-mpich >> --download-fblaslapack --download-mumps --download-scalapack >> --download-hypre --download-metis --download -parmetis --download-arpack >> --download-hdf5 --download-eigen --download-ptscotch --download-suitesparse >> --with-scalar-type = real --with-debugging = no >> >> El sábado, 27 de marzo de 2021 a la(s) 00:34:21 UTC-3, Wolfgang Bangerth >> escribió: >> >>> >>> Emmanuel, >>> what's the PETSc version you have installed? I wonder whether the PETSc >>> interfaces have changed again. >>> >>> Best >>> W. >>> >>> On 3/27/21 12:24 AM, Emmanuel Yarleque Medina wrote: >>> > Hello everyone: >>> > >>> > I'm trying to install deal II 9.2.0 on Ubuntu 20.04.2 LTS release with >>> comands: >>> > >>> > cmake -DCMAKE_INSTALL_PREFIX=/usr/local -DDEAL_II_WITH_MPI=ON >>> > -DPETSC_DIR=/home/hpc/petsc -DPETSC_ARCH=arch-linux2-c-opt >>> > -DDEAL_II_WITH_PETSC=ON >>> -DMETIS_DIR=/home/hpc/metis-5.1.0/build/Linux-x86_64 >>> > -DDEAL_II_WITH_METIS=ON -DP4EST_DIR=/home/hpc/p4est/DEBUG >>> > -DTRILINOS_DIR=/home/hpc/trilinos -DDEAL_II_WITH_TRILINOS=ON >>> > -DDEAL_II_WITH_P4EST=ON -DTrilinos_ENABLE_EXPLICIT_INSTANTIATION=ON >>> ../ >>> > >>> > and the following error happened: >>> > >>> > Scanning dependencies of target obj_non_matching_inst >>> > [ 19%] Generating coupling.inst >>> > [ 19%] Built target obj_physics_elasticity_inst >>> > Scanning dependencies of target obj_sundials_debug >>> > [ 19%] Built target obj_non_matching_inst >>> > Scanning dependencies of target obj_numerics_debug >>> > [ 19%] Building CXX object >>> > source/sundials/CMakeFiles/obj_sundials_debug.dir/arkode.cc.o >>> > [ 19%] Building CXX object >>> > source/numerics/CMakeFiles/obj_numerics_debug.dir/data_out.cc.o >>> > [ 19%] Building CXX object >>> > source/sundials/CMakeFiles/obj_sundials_debug.dir/ida.cc.o >>> > In file included from /home/hpc/petsc/include/petscsf.h:7, >>> > from /home/hpc/petsc/include/petsc.h:12, >>> > from >>> > /home/hpc/dealII/dealii-9.2.0/include/deal.II/fe/fe_values.h:52, >>> > from >>> > /home/hpc/dealII/dealii-9.2.0/source/numerics/data_out.cc:23: >>> > /home/hpc/petsc/include/petscis.h:216:47: error: expected initializer >>> before >>> > ‘ISColoringValue’ >>> > 216 | typedef unsigned PETSC_IS_COLORING_VALUE_TYPE ISColoringValue; >>> > | ^~~~~~~~~~~~~~~ >>> > /home/hpc/petsc/include/petscis.h:219:65: error: ‘ISColoringValue’ has >>> not >>> > been declared >>> > 219 | PETSC_EXTERN PetscErrorCode >>> > >>> ISAllGatherColors(MPI_Comm,PetscInt,ISColoringValue*,PetscInt*,ISColoringValue*[]); >>> >>> > | >>> > ^~~~~~~~~~~~~~~ >>> > /home/hpc/petsc/include/petscis.h:219:92: error: ‘ISColoringValue’ has >>> not >>> > been declared >>> > 219 | PETSC_EXTERN PetscErrorCode >>> > >>> ISAllGatherColors(MPI_Comm,PetscInt,ISColoringValue*,PetscInt*,ISColoringValue*[]); >>> >>> > | >>> > ^~~~~~~~~~~~~~~ >>> > /home/hpc/petsc/include/petscis.h:221:79: error: ‘ISColoringValue’ >>> does not >>> > name a type; did you mean ‘ISColoringType’? >>> > 221 | PETSC_EXTERN PetscErrorCode >>> > ISColoringCreate(MPI_Comm,PetscInt,PetscInt,const >>> > ISColoringValue[],PetscCopyMode,ISColoring*); >>> > | >>> > ^~~~~~~~~~~~~~~ >>> > | >>> > ISColoringType >>> > /home/hpc/petsc/include/petscis.h:230:86: error: ‘ISColoringValue’ >>> does not >>> > name a type; did you mean ‘ISColoringView’? >>> > 230 | PETSC_EXTERN PetscErrorCode >>> > ISColoringGetColors(ISColoring,PetscInt*,PetscInt*,const >>> ISColoringValue**); >>> > | >>> > ^~~~~~~~~~~~~~~ >>> > | >>> > ISColoringView >>> > In file included from /home/hpc/petsc/include/petscdm.h:6, >>> > from /home/hpc/petsc/include/petscdmda.h:4, >>> > from /home/hpc/petsc/include/petsc.h:14, >>> > from >>> > /home/hpc/dealII/dealii-9.2.0/include/deal.II/fe/fe_values.h:52, >>> > from >>> > /home/hpc/dealII/dealii-9.2.0/source/numerics/data_out.cc:23: >>> > /home/hpc/petsc/include/petscmat.h:1335:68: error: ‘ISColoringValue’ >>> has not >>> > been declared >>> > 1335 | PETSC_EXTERN PetscErrorCode >>> > MatColoringPatch(Mat,PetscInt,PetscInt,ISColoringValue[],ISColoring*); >>> > | >>> > ^~~~~~~~~~~~~~~ >>> > [ 19%] Building CXX object >>> > source/sundials/CMakeFiles/obj_sundials_debug.dir/copy.cc.o >>> > [ 19%] Building CXX object >>> > source/sundials/CMakeFiles/obj_sundials_debug.dir/kinsol.cc.o >>> > make[2]: *** >>> [source/numerics/CMakeFiles/obj_numerics_debug.dir/build.make:63: >>> > source/numerics/CMakeFiles/obj_numerics_debug.dir/data_out.cc.o] Erro >>> 1 >>> > make[1]: *** [CMakeFiles/Makefile2:1882: >>> > source/numerics/CMakeFiles/obj_numerics_debug.dir/all] Erro 2 >>> > make[1]: ** Esperando que outros processos terminem. >>> > [ 19%] Built target obj_sundials_debug >>> > make: *** [Makefile:130: all] Erro 2 >>> > hpc@hpc:~/dealII/dealii-9.2.0/build$ >>> > >>> > >>> > >>> > how can I resolve this error? >>> > >>> > Best regards, >>> > >>> > >>> > >>> > >>> > -- >>> > The deal.II project is located at http://www.dealii.org/ >>> > < >>> https://nam10.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.dealii.org%2F&data=04%7C01%7CWolfgang.Bangerth%40colostate.edu%7Cd587d0874fda4e3cec2b08d8f0ae5b89%7Cafb58802ff7a4bb1ab21367ff2ecfc8b%7C0%7C0%7C637523978960103853%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=XZzrxwNrIoXGRA7u%2BjqdoaEasOa0919yfdimTThIKz4%3D&reserved=0> >>> >>> > For mailing list/forum options, see >>> > https://groups.google.com/d/forum/dealii?hl=en >>> > < >>> https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgroups.google.com%2Fd%2Fforum%2Fdealii%3Fhl%3Den&data=04%7C01%7CWolfgang.Bangerth%40colostate.edu%7Cd587d0874fda4e3cec2b08d8f0ae5b89%7Cafb58802ff7a4bb1ab21367ff2ecfc8b%7C0%7C0%7C637523978960113849%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=HEDF6YFE0z5TvYRnp7jZ7mD31riWnHONO9pPFJT7qY8%3D&reserved=0> >>> >>> > --- >>> > You received this message because you are subscribed to the Google >>> Groups >>> > "deal.II User Group" group. >>> > To unsubscribe from this group and stop receiving emails from it, send >>> an >>> > email to [email protected] >>> > <mailto:[email protected]>. >>> > To view this discussion on the web visit >>> > >>> https://groups.google.com/d/msgid/dealii/a6553a48-5bf5-4d0c-9556-b652bdc3d52bn%40googlegroups.com >>> > < >>> https://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgroups.google.com%2Fd%2Fmsgid%2Fdealii%2Fa6553a48-5bf5-4d0c-9556-b652bdc3d52bn%2540googlegroups.com%3Futm_medium%3Demail%26utm_source%3Dfooter&data=04%7C01%7CWolfgang.Bangerth%40colostate.edu%7Cd587d0874fda4e3cec2b08d8f0ae5b89%7Cafb58802ff7a4bb1ab21367ff2ecfc8b%7C0%7C0%7C637523978960113849%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=UqZrZuzCRb%2BmjI%2Bi1A1AOG5IE1VSdwI9vAxS%2Fy2EKwQ%3D&reserved=0>. >>> >>> >>> >>> -- >>> ------------------------------------------------------------------------ >>> Wolfgang Bangerth email: [email protected] >>> www: http://www.math.colostate.edu/~bangerth/ >>> >>> -- > The deal.II project is located at http://www.dealii.org/ > For mailing list/forum options, see > https://groups.google.com/d/forum/dealii?hl=en > --- > You received this message because you are subscribed to a topic in the > Google Groups "deal.II User Group" group. > To unsubscribe from this topic, visit > https://groups.google.com/d/topic/dealii/GsQZX6LbMFE/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/dealii/e20f55c7-0d9a-403a-98ba-42cdac768b25n%40googlegroups.com > <https://groups.google.com/d/msgid/dealii/e20f55c7-0d9a-403a-98ba-42cdac768b25n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. 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