Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
7fd3f8b2 by Andreas Tille at 2020-03-04T01:45:09+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 03 Mar 2020 13:42:03 +0000
+Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 03 Mar 2020 13:42:04 +0000
+Last-Update: Wed, 04 Mar 2020 01:42:03 +0000
source | version |
upstream_version | uploaders
| Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -24,7 +24,6 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000
fis-gtm | 6.3-007 | 6.3-010
| Amul Shah,Andreas Tille
| Amul Shah | 2019-02-28 14:12:19+00
gatb-core | 1.4.1+git20191209.9398f28 |
1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova
| Michael R. Crusoe | 2020-02-17 14:52:30+00
gdcm | 3.0.4 | 3.0.5
| Gert Wollny,Sébastien Jodogne,Steve M. Robbins
| Gert Wollny | 2019-11-07 11:49:02+00
- gnumed-server | 22.9 | 22.11
| Andreas Tille,Sebastian Hilbert
| Andreas Tille | 2020-02-27 11:19:44+00
hdmf | 1.5.4 | 1.6.0
| Yaroslav Halchenko
| Yaroslav Halchenko | 2020-02-03 03:01:25+00
htsjdk | 2.18.2 | 2.21.2
| Andreas Tille,Charles Plessy,Olivier Sallou,Vincent
Danjean | Andreas Tille | 2019-03-01 22:19:40+00
hyphy | 2.5.1 | 2.5.4
| Andreas Tille
| Andreas Tille | 2020-01-07 21:19:50+00
@@ -51,7 +50,6 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000
ncbi-blast+ | 2.9.0 | 2.10.0
| Aaron M. Ucko,Andreas Tille,Olivier Sallou
| Aaron M. Ucko | 2020-02-17 01:50:53+00
ncbi-vdb | 2.10.3 | 2.10.4
| Andreas Tille
| Andreas Tille | 2020-02-24 21:12:17+00
ngs-sdk | 2.10.2 | 2.10.4
| Andreas Tille,Olivier Sallou,Vincent Danjean
| Michael R. Crusoe | 2020-02-17 15:36:45+00
- nibabel | 2.5.1 | 3.0.1
| Michael Hanke,Yaroslav Halchenko
| Andreas Tille | 2020-01-20 10:35:09+00
pbcopper | 1.3.0 | 1.4.0
| Andreas Tille
| Andreas Tille | 2020-01-29 08:51:15+00
pbgenomicconsensus | 2.3.2 | 2.3.3
| Andreas Tille
| Liubov Chuprikova | 2019-04-07 15:33:36+00
pbseqlib | 5.3.3 | 5.3.4
| Andreas Tille
| Andreas Tille | 2020-01-29 15:04:33+00
@@ -92,7 +90,7 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000
unanimity | 3.3.0 | 4.2.0
| Afif Elghraoui,Andreas Tille
| Adrian Bunk | 2019-02-06 07:34:42+00
vsearch | 2.14.1 | 2.14.2
| Andreas Tille,Tim Booth
| Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2
| Andreas Tille,Roland Marcus Rutschmann
| Andreas Tille | 2019-01-25 18:23:59+00
-(90 rows)
+(88 rows)
source | id | severity |
title
@@ -162,8 +160,6 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000
gemma | 952190 | serious | gemma: FTBFS:
dh_auto_test: error: make -j1 check returned exit code 2
gentle | 732691 | normal | Pressing "alignment or
Ctrl+G" only results in a dialog with a cancel button
ghmm | 936609 | normal | ghmm: Python2 removal in
sid/bullseye
- gnumed-client | 936630 | serious | gnumed-client: Python2
removal in sid/bullseye
- gnumed-client | 952633 | wishlist | gnumed-client: hints for
py3 packaging
harvest-tools | 943055 | normal | harvest-tools: Python2
removal in sid/bullseye
hinge | 952615 | serious | hinge: FTBFS:
fmt.h:22:10: fatal error: spdlog/fmt/bundled/core.h: No such file or directory
htsjdk | 877590 | normal | FTBFS: error: package
org.testng does not exist
@@ -185,7 +181,6 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000
kineticstools | 936797 | serious | kineticstools: Python2
removal in sid/bullseye
kissplice | 936798 | normal | kissplice: Python2
removal in sid/bullseye
kmer | 936802 | normal | kmer: Python2 removal in
sid/bullseye
- libbio-alignio-stockholm-perl | 952747 | serious |
libbio-alignio-stockholm-perl: missing Breaks+Replaces: libbio-perl-perl (<<
1.7.3)
libgtextutils | 925745 | serious | libgtextutils: ftbfs
with GCC-9
libhmsbeagle | 950367 | normal | confuses
DEB_HOST_MULTIARCH and DEB_HOST_GNU_TYPE
libjung-free-java | 884379 | minor | libjung-free-java: New
version available
@@ -257,7 +252,7 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000
q2-types | 950932 | normal | q2-types: FTBFS with
pandas 1.0: test failures
qcumber | 883260 | wishlist | qcumber: [INLT:ru]
Russian translation of debconf template
qcumber | 913936 | wishlist | qcumber: [INTL:pt_BR]
Brazilian Portuguese debconf templates translation
- qiime | 950842 | important | autopkg tests fail with
Python 3.8
+ qiime | 950842 | serious | autopkg tests fail with
Python 3.8
qrisk2 | 912118 | normal | qrisk2: 2017 upstream
release
qrisk2 | 912119 | normal | qrisk2: please provide
qrisk3
rapmap | 909766 | important | Use Debian packaged
spdlog instead of code copy of old version
@@ -265,8 +260,6 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000
salmon | 952102 | serious | salmon: FTBFS:
SalmonAlevin.cpp:780:6: error: ‘class rapmap::utils::MappingConfig’ has no
member named ‘maxSlack’
sambamba | 938431 | normal | sambamba: Python2
removal in sid/bullseye
sambamba | 948919 | serious | sambamba FTBFS:
undefined reference to 'cram_to_bam'
- seqan | 943260 | normal | seqan: Python2 removal
in sid/bullseye
- seqan | 952203 | serious | seqan: FTBFS:
dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4
returned exit code 2
seqan2 | 892222 | normal | seqan2: FTBFS on hppa:
app_test_seqan_tcoffee fails on 2trx.mlcs.fasta
seqan2 | 917851 | important | seqan2 2.4.0+dfsg-9:
FTBFS, alignment problem
simpleitk | 949355 | serious | simpleitk FTBFS: test
failures
@@ -292,5 +285,5 @@ Last-Update: Tue, 03 Mar 2020 13:42:04 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open
file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading
dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(195 rows)
+(190 rows)
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7fd3f8b2f2f7beefb8efb945920f1d1c0d7738be
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7fd3f8b2f2f7beefb8efb945920f1d1c0d7738be
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