Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
23118c59 by Andreas Tille at 2020-04-08T01:45:12+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 07 Apr 2020 13:42:04 +0000
+Last-Update: Wed, 08 Apr 2020 01:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 07 Apr 2020 13:42:04 +0000
+Last-Update: Wed, 08 Apr 2020 01:42:03 +0000
source | version |
upstream_version | uploaders
| Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -10,7 +10,6 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000
biomaj3-download | 3.1.0 | 3.1.2
| Olivier Sallou
| Olivier Sallou | 2019-11-12 13:19:24+00
biomaj3-process | 3.0.15 | 3.0.16
| Olivier Sallou
| Olivier Sallou | 2019-11-12 11:20:38+00
biosig4c++ | 1.9.5 | 2.0.2
| Michael Hanke,Yaroslav Halchenko
| Andreas Tille | 2020-03-02 08:38:37+00
- cwltool | 2.0.20200224214940 |
3.0.20200324120055 | Michael R. Crusoe
| Michael R. Crusoe | 2020-02-26 12:07:54+00
cyvcf2 | 0.11.6 | 0.11.7
| Liubov Chuprikova,Steffen Moeller
| Andreas Tille | 2020-03-30 09:03:56+00
daligner | 1.0+git20200115.c2b47da |
1.0+git20200322.477d5b9 | Andreas Tille
| Andreas Tille | 2020-01-28 10:34:12+00
dazzdb | 1.0+git20200115.d8adde7 |
1.0+git20200322.ba88d76 | Andreas Tille
| Andreas Tille | 2020-01-23 16:34:35+00
@@ -49,7 +48,6 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000
python-pbcore | 1.7.1+git20200313.41ba394 |
1.7.1+git20200326.ea0808a | Andreas Tille
| Steffen Moeller | 2020-03-21 19:39:08+00
python-pymummer | 0.10.3 | 0.11.0
| Afif Elghraoui
| Andreas Tille | 2019-01-07 09:06:07+00
python-schema-salad | 5.0.20200220195218 |
5.0.20200302192450 | Michael R. Crusoe
| Michael R. Crusoe | 2020-02-27 19:19:53+00
- python-skbio | 0.5.5 | 0.5.6
| Andreas Tille,Kevin Murray,Tim Booth
| Michael R. Crusoe | 2020-02-28 14:48:20+00
python-xopen | 0.8.4 | 0.9.0
| Andreas Tille
| Steffen Moeller | 2019-11-05 15:34:45+00
q2-types | 2019.10.0 | 2020.2.0
| Liubov Chuprikova
| Liubov Chuprikova | 2019-12-23 20:39:42+00
qiime | 2019.10.0 | 2020.2.0
| Andreas Tille,Liubov Chuprikova,Steffen Moeller
| Liubov Chuprikova | 2019-12-16 09:51:27+00
@@ -64,7 +62,7 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000
sumatra | 1.0.31 | 1.0.34
| Andreas Tille,Tim Booth
| Andreas Tille | 2018-10-16 10:06:33+00
t-coffee | 12.00.7fb08c2 |
13.41.0.28bdc39 | Andreas Tille,Steffen Moeller
| Andreas Tille | 2019-02-15 07:57:10+00
xmedcon | 0.16.1 | 0.16.2
| Andreas Tille,Roland Marcus Rutschmann
| Andreas Tille | 2019-01-25 18:23:59+00
-(62 rows)
+(60 rows)
source | id | severity |
title
@@ -89,7 +87,6 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000
bwa | 942447 | normal | Build bwa on ppc64el
camp | 900181 | normal | camp: FTBFS on 32bit big
endian: check metaclass->function("f4").call(object, camp::Args(1, 4,
15)).to<unsigned long>() == 20 has failed
clonalorigin | 884475 | wishlist | clonalorigin: FTBFS on
alpha: tests time out
- cwltool | 954496 | serious | cwltool: FTBFS:
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.7
3.8" returned exit code 13
dawg | 903886 | important | dawg: Test suite fails
dcmtk | 637687 | wishlist | libdcmtk2-dev: Dcmtk
headers cause compile failure
dcmtk | 675448 | important | dcmtk: dcmdjpeg does not
set (0028, 2114) LossyImageCompressionMethod when decompressing lossy
compressed DICOM file
@@ -147,7 +144,6 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000
ismrmrd | 863168 | important | ismrmrd FTBFS on armhf:
1 failure is detected in the test module "ISMRMRD Unit Tests"
jellyfish1 | 875328 | wishlist | jellyfish1: FTBFS:
__sync_val_compare_and_swap_8 undefined
khmer | 851830 | minor | arm64 has flaky tests
- khmer | 955566 | serious | khmer: autopkgtest
regression: undefined references
kineticstools | 936797 | serious | kineticstools: Python2
removal in sid/bullseye
kissplice | 936798 | serious | kissplice: Python2
removal in sid/bullseye
kmc | 954270 | important | kmc: arm64 autopkgtest
time out
@@ -174,6 +170,7 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000
mipe | 890788 | minor | mipe: Please provide
autopkgtest
mriconvert | 617342 | normal | 32-bit multiframe image
conversion ignores frames
mypy | 952757 | minor | mypy(1): build errors in
man page
+ nanopolish | 956136 | serious | nanopolish: FTBFS
(undefined references)
ncbi-blast+ | 891197 | normal | Please switch to pcre2
ncbi-tools6 | 225651 | wishlist | ncbi-tools-x11: want
Cn3D++
ncbi-vdb | 952627 | serious | libncbi-vdb2 uses
undefined symbols
@@ -222,7 +219,6 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000
python-pbcore | 919052 | normal | python-pbcore: some docs
for pbcore are not found
python-pysam | 938092 | normal | python-pysam: Python2
removal in sid/bullseye
python-ruffus | 841073 | wishlist | python-ruffus: Needs 18
GB of RAM to build
- python-skbio | 951222 | serious | scikit-learn breaks
python-skbio autopkgtest: skbio.stats.distance._permdisp.permdisp
python-tinyalign | 952603 | normal | python-tinyalign:
license of buildwheels.sh is CC0
q2cli | 954601 | serious | q2cli: FTBFS:
dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.8 -s
custom "--test-args=cd {build_dir}; HOME=/<<PKGBUILDDIR>> QIIMETEST=
nosetests3" returned exit code 13
q2-demux | 950933 | normal | q2-demux: FTBFS with
pandas 1.0: test failures
@@ -267,5 +263,5 @@ Last-Update: Tue, 07 Apr 2020 13:42:04 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open
file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading
dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(198 rows)
+(196 rows)
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/23118c59da162c2124bbb4741cb716c41165de95
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/23118c59da162c2124bbb4741cb716c41165de95
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