Le 6/5/12 4:56 PM, Andreas Tille a écrit : > Hi, > > after now having all preconditions for beast packaged in Debian upstream > had release a new version meanwhile. I was quite optimistic but now I > was running into Java detail problems: > > > compile-all: > [mkdir] Created dir: > /home/tillea/debian-maintain/repack/beast/beast-mcmc-1.7.2/build > [javac] > /home/tillea/debian-maintain/repack/beast/beast-mcmc-1.7.2/build.xml:67: > warning: 'includeantruntime' was not set, defaulting to > build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 1875 source files to > /home/tillea/debian-maintain/repack/beast/beast-mcmc-1.7.2/build > [javac] > /home/tillea/debian-maintain/repack/beast/beast-mcmc-1.7.2/src/dr/app/beagle/evomodel/sitemodel/EpochBranchSubstitutionModel.java:463: > cannot find symbol > [javac] symbol : method convolveTransitionMatrices(int[],int[],int[],int) > [javac] location: interface beagle.Beagle > [javac] > beagle.convolveTransitionMatrices(firstConvolutionBuffers, // A > [javac] ^ > [javac] Note: Some input files use or override a deprecated API. > [javac] Note: Recompile with -Xlint:deprecation for details. > [javac] Note: Some input files use unchecked or unsafe operations. > [javac] Note: Recompile with -Xlint:unchecked for details. > [javac] 1 error > > > Any idea? (You can get the upstream source tarball via After a look, it appears that beagle package (beagle/beagle.java) does not provide method
convolveTransitionMatrices So I think there is a version issue between beagle and beast-mcmc use of beagle (too recent or not recent enough) Olivier > > uscan --verbose --force-depends > > ) > > Kind regards > > Andreas. > -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/[email protected]
