Le 6/6/12 8:28 AM, Olivier Sallou a écrit : > > Le 6/5/12 4:56 PM, Andreas Tille a écrit : >> Hi, >> >> after now having all preconditions for beast packaged in Debian upstream >> had release a new version meanwhile. I was quite optimistic but now I >> was running into Java detail problems: >> >> >> compile-all: >> [mkdir] Created dir: >> /home/tillea/debian-maintain/repack/beast/beast-mcmc-1.7.2/build >> [javac] >> /home/tillea/debian-maintain/repack/beast/beast-mcmc-1.7.2/build.xml:67: >> warning: 'includeantruntime' was not set, defaulting to >> build.sysclasspath=last; set to false for repeatable builds >> [javac] Compiling 1875 source files to >> /home/tillea/debian-maintain/repack/beast/beast-mcmc-1.7.2/build >> [javac] >> /home/tillea/debian-maintain/repack/beast/beast-mcmc-1.7.2/src/dr/app/beagle/evomodel/sitemodel/EpochBranchSubstitutionModel.java:463: >> cannot find symbol >> [javac] symbol : method >> convolveTransitionMatrices(int[],int[],int[],int) >> [javac] location: interface beagle.Beagle >> [javac] >> beagle.convolveTransitionMatrices(firstConvolutionBuffers, // A >> [javac] ^ >> [javac] Note: Some input files use or override a deprecated API. >> [javac] Note: Recompile with -Xlint:deprecation for details. >> [javac] Note: Some input files use unchecked or unsafe operations. >> [javac] Note: Recompile with -Xlint:unchecked for details. >> [javac] 1 error >> >> >> Any idea? (You can get the upstream source tarball via > After a look, it appears that beagle package (beagle/beagle.java) does > not provide method > > convolveTransitionMatrices > > > So I think there is a version issue between beagle and beast-mcmc use of > beagle (too recent or not recent enough) > Olivier It is available is Beast 1.1, you should upgrade package first... :-(
Olivier >> uscan --verbose --force-depends >> >> ) >> >> Kind regards >> >> Andreas. >> -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/[email protected]
