Le 6/6/12 5:05 PM, Olivier Sallou a écrit : > > Le 6/6/12 2:16 PM, Andreas Tille a écrit : >> On Wed, Jun 06, 2012 at 08:33:49AM +0200, Olivier Sallou wrote: >>>>> Any idea? (You can get the upstream source tarball via >>>> After a look, it appears that beagle package (beagle/beagle.java) does >>>> not provide method >>>> >>>> convolveTransitionMatrices >>>> >>>> >>>> So I think there is a version issue between beagle and beast-mcmc use of >>>> beagle (too recent or not recent enough) >>>> Olivier >>> It is available is Beast 1.1, you should upgrade package first... :-( >> Hmmm, if I'm using >> >> uscan --verbose --force-depends >> >> I get an orig.source.gz containing: >> >> $ ls libhmsbeagle-1.1/java/beagle/ >> BeagleErrorCode.java BeagleInfo.java DependencyAwareBeagleImpl.java >> ResourceDetails.java >> BeagleException.java Beagle.java FourStateBeagleImpl.java >> BeagleFactory.java BeagleJNIImpl.java GeneralBeagleImpl.java >> BeagleFlag.java BeagleJNIWrapper.java InstanceDetails.java >> $ grep -R convolveTransitionMatrices libhmsbeagle-1.1 >> $ >> >> So from my perspective there is no such method convolveTransitionMatrices. >> >> How exactly did you got a tarball containing this method? Straight >> checkout form SVN? > I just browsed the SVN directory, I did not download it. Sorry, my fault! this is in trunk [0], not v1.1 branch , introduced in last commit r1058 <http://code.google.com/p/beagle-lib/source/detail?spec=svn1089&r=1058> by fbielejec on Jan 26, 2012
so not versionned.... means beast does not rely on a stable release of beagle? [0] http://code.google.com/p/beagle-lib/source/browse/trunk/java/beagle/Beagle.java Olivier >> Kind regards >> >> Andreas. >> -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
