I had to patch trinity fot gcc5, did you test with this version? I have provided patch to upstream, and can give it to you if necessary
Le sam. 22 août 2015 02:57, Michael Crusoe <[email protected]> a écrit : > Hello again Olivier, > > Thank you for asking for an update on the trinityrnaseq related packages: > > trinityrnaseq: waiting on libjung-free-java, rsem, express, and jaligner. > Otherwise all the tests run successfully for me. > > libjung-free-java package: in NEW queue courtesy Olivier > https://ftp-master.debian.org/new/libjung-free-java_2.0.1-1.html > > rsem: waiting for r-bioc-ebseq; needs manpages, patch descriptions, add > new patches to add hardening flags > > r-bioc-ebseq: ready for sponsoring now that r-cran-blockmodeling is in the > archive > > express: now renamed to `berkeley-express` as 'bio-express' and > 'seq-express' have other significant Google hits. Needs a patch to add > hardening flags. > > jaligner: in NEW queue: > https://ftp-master.debian.org/new/jaligner_1.0-1.html > > === > > Any and all assistance you and the group can provide for the above would > be greatly appreciated! > > On Thu, Aug 20, 2015 at 11:32 PM olivier sallou <[email protected]> > wrote: > >> Hi Michael, >> I was about to package trinityrnaseq when I found your ITP to package it. >> What is the status of the package? >> >> Thanks >> >> Olivier >> > -- > Michael R. Crusoe: Programmer & Bioinformatician [email protected] > The lab for Data Intensive Biology; University of California, Davis > https://impactstory.org/MichaelRCrusoe http://twitter.com/biocrusoe >
