On Fri, Aug 21, 2015 at 11:05 PM olivier sallou <[email protected]> wrote:
> I had to patch trinity fot gcc5, did you test with this version? I have > provided patch to upstream, and can give it to you if necessary > Yeah, I just ran into those problems. Feel free to send the patch to me or commit it directly. I'm sure upstream will appreciate them as well! > > Le sam. 22 août 2015 02:57, Michael Crusoe <[email protected]> a > écrit : > >> Hello again Olivier, >> >> Thank you for asking for an update on the trinityrnaseq related packages: >> >> trinityrnaseq: waiting on libjung-free-java, rsem, express, and >> jaligner. Otherwise all the tests run successfully for me. >> >> libjung-free-java package: in NEW queue courtesy Olivier >> https://ftp-master.debian.org/new/libjung-free-java_2.0.1-1.html >> >> rsem: waiting for r-bioc-ebseq; needs manpages, patch descriptions, add >> new patches to add hardening flags >> >> r-bioc-ebseq: ready for sponsoring now that r-cran-blockmodeling is in >> the archive >> >> express: now renamed to `berkeley-express` as 'bio-express' and >> 'seq-express' have other significant Google hits. Needs a patch to add >> hardening flags. >> >> jaligner: in NEW queue: >> https://ftp-master.debian.org/new/jaligner_1.0-1.html >> >> === >> >> Any and all assistance you and the group can provide for the above would >> be greatly appreciated! >> >> On Thu, Aug 20, 2015 at 11:32 PM olivier sallou <[email protected]> >> wrote: >> >>> Hi Michael, >>> I was about to package trinityrnaseq when I found your ITP to package it. >>> What is the status of the package? >>> >>> Thanks >>> >>> Olivier >>> >> -- >> Michael R. Crusoe: Programmer & Bioinformatician [email protected] >> The lab for Data Intensive Biology; University of California, Davis >> https://impactstory.org/MichaelRCrusoe http://twitter.com/biocrusoe >> > -- Michael R. Crusoe: Programmer & Bioinformatician [email protected] The lab for Data Intensive Biology; University of California, Davis https://impactstory.org/MichaelRCrusoe http://twitter.com/biocrusoe
