Le dim. 23 août 2015 à 13:22, olivier sallou <[email protected]> a écrit :
> I already sent patch to upstream > > Le sam. 22 août 2015 18:01, Michael Crusoe <[email protected]> a > écrit : > >> On Fri, Aug 21, 2015 at 11:05 PM olivier sallou <[email protected]> >> wrote: >> >>> I had to patch trinity fot gcc5, did you test with this version? I have >>> provided patch to upstream, and can give it to you if necessary >>> >> >> Yeah, I just ran into those problems. Feel free to send the patch to me >> or commit it directly. I'm sure upstream will appreciate them as well! >> > I have added patches to git repo > >> >>> >>> Le sam. 22 août 2015 02:57, Michael Crusoe <[email protected]> a >>> écrit : >>> >>>> Hello again Olivier, >>>> >>>> Thank you for asking for an update on the trinityrnaseq related >>>> packages: >>>> >>>> trinityrnaseq: waiting on libjung-free-java, rsem, express, and >>>> jaligner. Otherwise all the tests run successfully for me. >>>> >>>> libjung-free-java package: in NEW queue courtesy Olivier >>>> https://ftp-master.debian.org/new/libjung-free-java_2.0.1-1.html >>>> >>>> rsem: waiting for r-bioc-ebseq; needs manpages, patch descriptions, add >>>> new patches to add hardening flags >>>> >>>> r-bioc-ebseq: ready for sponsoring now that r-cran-blockmodeling is in >>>> the archive >>>> >>>> express: now renamed to `berkeley-express` as 'bio-express' and >>>> 'seq-express' have other significant Google hits. Needs a patch to add >>>> hardening flags. >>>> >>>> jaligner: in NEW queue: >>>> https://ftp-master.debian.org/new/jaligner_1.0-1.html >>>> >>>> === >>>> >>>> Any and all assistance you and the group can provide for the above >>>> would be greatly appreciated! >>>> >>>> On Thu, Aug 20, 2015 at 11:32 PM olivier sallou <[email protected]> >>>> wrote: >>>> >>>>> Hi Michael, >>>>> I was about to package trinityrnaseq when I found your ITP to package >>>>> it. >>>>> What is the status of the package? >>>>> >>>>> Thanks >>>>> >>>>> Olivier >>>>> >>>> -- >>>> Michael R. Crusoe: Programmer & Bioinformatician [email protected] >>>> The lab for Data Intensive Biology; University of California, Davis >>>> https://impactstory.org/MichaelRCrusoe http://twitter.com/biocrusoe >>>> >>> -- >> Michael R. Crusoe: Programmer & Bioinformatician [email protected] >> The lab for Data Intensive Biology; University of California, Davis >> https://impactstory.org/MichaelRCrusoe http://twitter.com/biocrusoe >> >
