Hi Canberk, On Tue, Aug 09, 2016 at 07:46:26AM +0300, Canberk Koç wrote: > I make a little test for Emboss. > I found there is a test directory in this package but tests are not > complete i think , > make check did not do anything useful so they will add tests to the > package i assume .
OK, having at least some partial test is better than no test at all. Where the hints for ncbi-tools6 by Aaron and me helpful? > Another issue GSoC send me an email again and final evaluation is on 15 > august for students so i'll send them commits how is our progress you think > ? I admit I would have hoped that we would manage more packages at the end but the second half went better than the first. It would be great if you could keep on adding tests even after GSoC has finished and we might manage to get tests for most of the Debian Med packages until Freeze for Debian 9 (about end of the year). > I have a question also how can i find which packages i committed with a > script what should i use ? You could query the public UDD mirror via PGPASSWORD="public-udd-mirror" psql --host=public-udd-mirror.xvm.mit.edu --username=public-udd-mirror udd The following query is an example how to get those packages featuring you as changelog owner and adding the Vcs URL in Git. udd=> SELECT DISTINCT u.source, u.version, s.vcs_url FROM upload_history u JOIN sources s ON u.source = s.source WHERE changed_by_email = '[email protected]' and s.release='sid' and s.vcs_url not like 'svn%' order by u.source ; source | version | vcs_url -------------+-------------------+------------------------------------------------------------------------- amap-align | 2.2-6 | https://anonscm.debian.org/git/debian-med/amap-align.git bwa | 0.7.15-2 | https://anonscm.debian.org/git/debian-med/bwa.git clustalo | 1.2.2-1 | https://anonscm.debian.org/git/debian-med/clustalo.git clustalw | 2.1+lgpl-5 | https://anonscm.debian.org/git/debian-med/clustalw.git dialign | 2.2.1-8 | https://anonscm.debian.org/git/debian-med/dialign.git exonerate | 2.4.0-2 | https://anonscm.debian.org/git/debian-med/exonerate.git fastqc | 0.11.5+dfsg-3 | https://anonscm.debian.org/git/debian-med/fastqc.git gdpc | 2.2.5-6 | https://anonscm.debian.org/git/debian-med/gdpc.git hmmer | 3.1b2+dfsg-1 | https://anonscm.debian.org/git/debian-med/hmmer.git hmmer2 | 2.3.2-10 | https://anonscm.debian.org/git/debian-med/hmmer2.git htslib | 1.3.1-2 | https://anonscm.debian.org/git/debian-med/htslib.git infernal | 1.1.1-5 | https://anonscm.debian.org/git/debian-med/infernal.git kalign | 1:2.03+20110620-3 | https://anonscm.debian.org/git/debian-med/kalign.git mummer | 3.23+dfsg-1 | https://anonscm.debian.org/git/debian-med/mummer.git muscle | 1:3.8.31+dfsg-2 | https://anonscm.debian.org/git/debian-med/muscle.git ncbi-blast+ | 2.3.0-2 | https://anonscm.debian.org/git/debian-med/ncbi-blast+.git phylip | 1:3.696+dfsg-3 | https://anonscm.debian.org/git/debian-med/phylip.git primer3 | 2.3.7-2 | https://anonscm.debian.org/git/debian-med/primer3.git probcons | 1.12-11 | https://anonscm.debian.org/git/debian-med/probcons.git t-coffee | 11.00.8cbe486-4 | https://anonscm.debian.org/git/debian-med/t-coffee.git vcftools | 0.1.14+dfsg-3 | https://anonscm.debian.org/git/debian-med/vcftools.git (21 Zeilen) > Thanks for your help and support. You are welcome. Updated todo list: ncbi-tools6 njplot (according to manual there is an option without X11, -> https://anonscm.debian.org/git/debian-med/njplot.git picard-tools cd-hit tigr-glimmer Kind regards Andreas. -- http://fam-tille.de
