Moved tigr-glimmer to Git. I'll answer more detailed tomorrow since I was offline today. Kind regards, Andreas.
On Thu, Aug 11, 2016 at 09:29:10AM +0300, Canberk Koç wrote: > Hello Andreas, > > I make a suit for tigr-glimmer but package in SVN can you please move it to > git. > > Best Regards > > > > Canberk Koç > [image: https://]about.me/canberkkoc > <https://about.me/canberkkoc?promo=email_sig&utm_source=email_sig&utm_medium=email_sig&utm_campaign=external_links> > > 2016-08-11 8:10 GMT+03:00 Canberk Koç <[email protected]>: > > > Hello Andreas, > > > > I commit Cd-Hit according to it's manual but these example codes did not > > work also there is no command like cd-hit when i install the program. So as > > you say i commit it with errors in test so we can figure it our together . > > > > Best Regards > > > > > > > > Canberk Koç > > [image: https://]about.me/canberkkoc > > > > <https://about.me/canberkkoc?promo=email_sig&utm_source=email_sig&utm_medium=email_sig&utm_campaign=external_links> > > > > 2016-08-09 10:59 GMT+03:00 Canberk Koç <[email protected]>: > > > >> Hello Andreas, > >> > >> I'll gladly do tests and keep going before end of the year i think we can > >> manage to cover most of packages. Tools6 issue i'll make partial test to > >> blast2 and binaries packages in it if i stuck i'll inform you again i am > >> going on. Thanks for help. > >> > >> Best Regards > >> > >> > >> > >> Canberk Koç > >> [image: https://]about.me/canberkkoc > >> > >> <https://about.me/canberkkoc?promo=email_sig&utm_source=email_sig&utm_medium=email_sig&utm_campaign=external_links> > >> > >> 2016-08-09 9:38 GMT+03:00 Andreas Tille <[email protected]>: > >> > >>> Hi Canberk, > >>> > >>> On Tue, Aug 09, 2016 at 07:46:26AM +0300, Canberk Koç wrote: > >>> > I make a little test for Emboss. > >>> > I found there is a test directory in this package but tests are not > >>> > complete i think , > >>> > make check did not do anything useful so they will add tests to the > >>> > package i assume . > >>> > >>> OK, having at least some partial test is better than no test at all. > >>> > >>> Where the hints for ncbi-tools6 by Aaron and me helpful? > >>> > >>> > Another issue GSoC send me an email again and final evaluation is on 15 > >>> > august for students so i'll send them commits how is our progress you > >>> think > >>> > ? > >>> > >>> I admit I would have hoped that we would manage more packages at the end > >>> but the second half went better than the first. It would be great if > >>> you could keep on adding tests even after GSoC has finished and we might > >>> manage to get tests for most of the Debian Med packages until Freeze for > >>> Debian 9 (about end of the year). > >>> > >>> > I have a question also how can i find which packages i committed with a > >>> > script what should i use ? > >>> > >>> You could query the public UDD mirror via > >>> > >>> PGPASSWORD="public-udd-mirror" psql --host=public-udd-mirror.xvm.m > >>> it.edu --username=public-udd-mirror udd > >>> > >>> The following query is an example how to get those packages featuring > >>> you as changelog owner and adding the Vcs URL in Git. > >>> > >>> udd=> SELECT DISTINCT u.source, u.version, s.vcs_url FROM upload_history > >>> u JOIN sources s ON u.source = s.source WHERE changed_by_email = ' > >>> [email protected]' and s.release='sid' and s.vcs_url not like 'svn%' > >>> order by u.source ; > >>> source | version | > >>> vcs_url > >>> -------------+-------------------+-------------------------- > >>> ----------------------------------------------- > >>> amap-align | 2.2-6 | https://anonscm.debian.org/git > >>> /debian-med/amap-align.git > >>> bwa | 0.7.15-2 | https://anonscm.debian.org/git > >>> /debian-med/bwa.git > >>> clustalo | 1.2.2-1 | https://anonscm.debian.org/git > >>> /debian-med/clustalo.git > >>> clustalw | 2.1+lgpl-5 | https://anonscm.debian.org/git > >>> /debian-med/clustalw.git > >>> dialign | 2.2.1-8 | https://anonscm.debian.org/git > >>> /debian-med/dialign.git > >>> exonerate | 2.4.0-2 | https://anonscm.debian.org/git > >>> /debian-med/exonerate.git > >>> fastqc | 0.11.5+dfsg-3 | https://anonscm.debian.org/git > >>> /debian-med/fastqc.git > >>> gdpc | 2.2.5-6 | https://anonscm.debian.org/git > >>> /debian-med/gdpc.git > >>> hmmer | 3.1b2+dfsg-1 | https://anonscm.debian.org/git > >>> /debian-med/hmmer.git > >>> hmmer2 | 2.3.2-10 | https://anonscm.debian.org/git > >>> /debian-med/hmmer2.git > >>> htslib | 1.3.1-2 | https://anonscm.debian.org/git > >>> /debian-med/htslib.git > >>> infernal | 1.1.1-5 | https://anonscm.debian.org/git > >>> /debian-med/infernal.git > >>> kalign | 1:2.03+20110620-3 | https://anonscm.debian.org/git > >>> /debian-med/kalign.git > >>> mummer | 3.23+dfsg-1 | https://anonscm.debian.org/git > >>> /debian-med/mummer.git > >>> muscle | 1:3.8.31+dfsg-2 | https://anonscm.debian.org/git > >>> /debian-med/muscle.git > >>> ncbi-blast+ | 2.3.0-2 | https://anonscm.debian.org/git > >>> /debian-med/ncbi-blast+.git > >>> phylip | 1:3.696+dfsg-3 | https://anonscm.debian.org/git > >>> /debian-med/phylip.git > >>> primer3 | 2.3.7-2 | https://anonscm.debian.org/git > >>> /debian-med/primer3.git > >>> probcons | 1.12-11 | https://anonscm.debian.org/git > >>> /debian-med/probcons.git > >>> t-coffee | 11.00.8cbe486-4 | https://anonscm.debian.org/git > >>> /debian-med/t-coffee.git > >>> vcftools | 0.1.14+dfsg-3 | https://anonscm.debian.org/git > >>> /debian-med/vcftools.git > >>> (21 Zeilen) > >>> > >>> > Thanks for your help and support. > >>> > >>> You are welcome. > >>> > >>> Updated todo list: > >>> > >>> ncbi-tools6 > >>> njplot (according to manual there is an option without X11, > >>> -> https://anonscm.debian.org/git/debian-med/njplot.git > >>> picard-tools > >>> cd-hit > >>> tigr-glimmer > >>> > >>> Kind regards > >>> > >>> Andreas. > >>> > >>> -- > >>> http://fam-tille.de > >>> > >> > >> > > -- http://fam-tille.de
