Hello Andreas, I make a suit for tigr-glimmer but package in SVN can you please move it to git.
Best Regards Canberk Koç [image: https://]about.me/canberkkoc <https://about.me/canberkkoc?promo=email_sig&utm_source=email_sig&utm_medium=email_sig&utm_campaign=external_links> 2016-08-11 8:10 GMT+03:00 Canberk Koç <[email protected]>: > Hello Andreas, > > I commit Cd-Hit according to it's manual but these example codes did not > work also there is no command like cd-hit when i install the program. So as > you say i commit it with errors in test so we can figure it our together . > > Best Regards > > > > Canberk Koç > [image: https://]about.me/canberkkoc > > <https://about.me/canberkkoc?promo=email_sig&utm_source=email_sig&utm_medium=email_sig&utm_campaign=external_links> > > 2016-08-09 10:59 GMT+03:00 Canberk Koç <[email protected]>: > >> Hello Andreas, >> >> I'll gladly do tests and keep going before end of the year i think we can >> manage to cover most of packages. Tools6 issue i'll make partial test to >> blast2 and binaries packages in it if i stuck i'll inform you again i am >> going on. Thanks for help. >> >> Best Regards >> >> >> >> Canberk Koç >> [image: https://]about.me/canberkkoc >> >> <https://about.me/canberkkoc?promo=email_sig&utm_source=email_sig&utm_medium=email_sig&utm_campaign=external_links> >> >> 2016-08-09 9:38 GMT+03:00 Andreas Tille <[email protected]>: >> >>> Hi Canberk, >>> >>> On Tue, Aug 09, 2016 at 07:46:26AM +0300, Canberk Koç wrote: >>> > I make a little test for Emboss. >>> > I found there is a test directory in this package but tests are not >>> > complete i think , >>> > make check did not do anything useful so they will add tests to the >>> > package i assume . >>> >>> OK, having at least some partial test is better than no test at all. >>> >>> Where the hints for ncbi-tools6 by Aaron and me helpful? >>> >>> > Another issue GSoC send me an email again and final evaluation is on 15 >>> > august for students so i'll send them commits how is our progress you >>> think >>> > ? >>> >>> I admit I would have hoped that we would manage more packages at the end >>> but the second half went better than the first. It would be great if >>> you could keep on adding tests even after GSoC has finished and we might >>> manage to get tests for most of the Debian Med packages until Freeze for >>> Debian 9 (about end of the year). >>> >>> > I have a question also how can i find which packages i committed with a >>> > script what should i use ? >>> >>> You could query the public UDD mirror via >>> >>> PGPASSWORD="public-udd-mirror" psql --host=public-udd-mirror.xvm.m >>> it.edu --username=public-udd-mirror udd >>> >>> The following query is an example how to get those packages featuring >>> you as changelog owner and adding the Vcs URL in Git. >>> >>> udd=> SELECT DISTINCT u.source, u.version, s.vcs_url FROM upload_history >>> u JOIN sources s ON u.source = s.source WHERE changed_by_email = ' >>> [email protected]' and s.release='sid' and s.vcs_url not like 'svn%' >>> order by u.source ; >>> source | version | >>> vcs_url >>> -------------+-------------------+-------------------------- >>> ----------------------------------------------- >>> amap-align | 2.2-6 | https://anonscm.debian.org/git >>> /debian-med/amap-align.git >>> bwa | 0.7.15-2 | https://anonscm.debian.org/git >>> /debian-med/bwa.git >>> clustalo | 1.2.2-1 | https://anonscm.debian.org/git >>> /debian-med/clustalo.git >>> clustalw | 2.1+lgpl-5 | https://anonscm.debian.org/git >>> /debian-med/clustalw.git >>> dialign | 2.2.1-8 | https://anonscm.debian.org/git >>> /debian-med/dialign.git >>> exonerate | 2.4.0-2 | https://anonscm.debian.org/git >>> /debian-med/exonerate.git >>> fastqc | 0.11.5+dfsg-3 | https://anonscm.debian.org/git >>> /debian-med/fastqc.git >>> gdpc | 2.2.5-6 | https://anonscm.debian.org/git >>> /debian-med/gdpc.git >>> hmmer | 3.1b2+dfsg-1 | https://anonscm.debian.org/git >>> /debian-med/hmmer.git >>> hmmer2 | 2.3.2-10 | https://anonscm.debian.org/git >>> /debian-med/hmmer2.git >>> htslib | 1.3.1-2 | https://anonscm.debian.org/git >>> /debian-med/htslib.git >>> infernal | 1.1.1-5 | https://anonscm.debian.org/git >>> /debian-med/infernal.git >>> kalign | 1:2.03+20110620-3 | https://anonscm.debian.org/git >>> /debian-med/kalign.git >>> mummer | 3.23+dfsg-1 | https://anonscm.debian.org/git >>> /debian-med/mummer.git >>> muscle | 1:3.8.31+dfsg-2 | https://anonscm.debian.org/git >>> /debian-med/muscle.git >>> ncbi-blast+ | 2.3.0-2 | https://anonscm.debian.org/git >>> /debian-med/ncbi-blast+.git >>> phylip | 1:3.696+dfsg-3 | https://anonscm.debian.org/git >>> /debian-med/phylip.git >>> primer3 | 2.3.7-2 | https://anonscm.debian.org/git >>> /debian-med/primer3.git >>> probcons | 1.12-11 | https://anonscm.debian.org/git >>> /debian-med/probcons.git >>> t-coffee | 11.00.8cbe486-4 | https://anonscm.debian.org/git >>> /debian-med/t-coffee.git >>> vcftools | 0.1.14+dfsg-3 | https://anonscm.debian.org/git >>> /debian-med/vcftools.git >>> (21 Zeilen) >>> >>> > Thanks for your help and support. >>> >>> You are welcome. >>> >>> Updated todo list: >>> >>> ncbi-tools6 >>> njplot (according to manual there is an option without X11, >>> -> https://anonscm.debian.org/git/debian-med/njplot.git >>> picard-tools >>> cd-hit >>> tigr-glimmer >>> >>> Kind regards >>> >>> Andreas. >>> >>> -- >>> http://fam-tille.de >>> >> >> >
