Hello Andreas, I'll gladly do tests and keep going before end of the year i think we can manage to cover most of packages. Tools6 issue i'll make partial test to blast2 and binaries packages in it if i stuck i'll inform you again i am going on. Thanks for help.
Best Regards Canberk Koç [image: https://]about.me/canberkkoc <https://about.me/canberkkoc?promo=email_sig&utm_source=email_sig&utm_medium=email_sig&utm_campaign=external_links> 2016-08-09 9:38 GMT+03:00 Andreas Tille <[email protected]>: > Hi Canberk, > > On Tue, Aug 09, 2016 at 07:46:26AM +0300, Canberk Koç wrote: > > I make a little test for Emboss. > > I found there is a test directory in this package but tests are not > > complete i think , > > make check did not do anything useful so they will add tests to the > > package i assume . > > OK, having at least some partial test is better than no test at all. > > Where the hints for ncbi-tools6 by Aaron and me helpful? > > > Another issue GSoC send me an email again and final evaluation is on 15 > > august for students so i'll send them commits how is our progress you > think > > ? > > I admit I would have hoped that we would manage more packages at the end > but the second half went better than the first. It would be great if > you could keep on adding tests even after GSoC has finished and we might > manage to get tests for most of the Debian Med packages until Freeze for > Debian 9 (about end of the year). > > > I have a question also how can i find which packages i committed with a > > script what should i use ? > > You could query the public UDD mirror via > > PGPASSWORD="public-udd-mirror" psql --host=public-udd-mirror.xvm.mit.edu > --username=public-udd-mirror udd > > The following query is an example how to get those packages featuring > you as changelog owner and adding the Vcs URL in Git. > > udd=> SELECT DISTINCT u.source, u.version, s.vcs_url FROM upload_history u > JOIN sources s ON u.source = s.source WHERE changed_by_email = ' > [email protected]' and s.release='sid' and s.vcs_url not like 'svn%' > order by u.source ; > source | version | vcs_url > -------------+-------------------+-------------------------- > ----------------------------------------------- > amap-align | 2.2-6 | https://anonscm.debian.org/ > git/debian-med/amap-align.git > bwa | 0.7.15-2 | https://anonscm.debian.org/ > git/debian-med/bwa.git > clustalo | 1.2.2-1 | https://anonscm.debian.org/ > git/debian-med/clustalo.git > clustalw | 2.1+lgpl-5 | https://anonscm.debian.org/ > git/debian-med/clustalw.git > dialign | 2.2.1-8 | https://anonscm.debian.org/ > git/debian-med/dialign.git > exonerate | 2.4.0-2 | https://anonscm.debian.org/ > git/debian-med/exonerate.git > fastqc | 0.11.5+dfsg-3 | https://anonscm.debian.org/ > git/debian-med/fastqc.git > gdpc | 2.2.5-6 | https://anonscm.debian.org/ > git/debian-med/gdpc.git > hmmer | 3.1b2+dfsg-1 | https://anonscm.debian.org/ > git/debian-med/hmmer.git > hmmer2 | 2.3.2-10 | https://anonscm.debian.org/ > git/debian-med/hmmer2.git > htslib | 1.3.1-2 | https://anonscm.debian.org/ > git/debian-med/htslib.git > infernal | 1.1.1-5 | https://anonscm.debian.org/ > git/debian-med/infernal.git > kalign | 1:2.03+20110620-3 | https://anonscm.debian.org/ > git/debian-med/kalign.git > mummer | 3.23+dfsg-1 | https://anonscm.debian.org/ > git/debian-med/mummer.git > muscle | 1:3.8.31+dfsg-2 | https://anonscm.debian.org/ > git/debian-med/muscle.git > ncbi-blast+ | 2.3.0-2 | https://anonscm.debian.org/ > git/debian-med/ncbi-blast+.git > phylip | 1:3.696+dfsg-3 | https://anonscm.debian.org/ > git/debian-med/phylip.git > primer3 | 2.3.7-2 | https://anonscm.debian.org/ > git/debian-med/primer3.git > probcons | 1.12-11 | https://anonscm.debian.org/ > git/debian-med/probcons.git > t-coffee | 11.00.8cbe486-4 | https://anonscm.debian.org/ > git/debian-med/t-coffee.git > vcftools | 0.1.14+dfsg-3 | https://anonscm.debian.org/ > git/debian-med/vcftools.git > (21 Zeilen) > > > Thanks for your help and support. > > You are welcome. > > Updated todo list: > > ncbi-tools6 > njplot (according to manual there is an option without X11, > -> https://anonscm.debian.org/git/debian-med/njplot.git > picard-tools > cd-hit > tigr-glimmer > > Kind regards > > Andreas. > > -- > http://fam-tille.de >
