Hi Andreas, I finally find fast5 files from poretools which is an utility for converting fast5 to fasta/fastq file. There are fast5 examples on poretools' github page. Is there any thing we need to specify for this data in debian directory?
Regards 2016-11-12 1:01 GMT+03:00 Andreas Tille <andr...@an3as.eu>: > Hi, > > On Fri, Nov 11, 2016 at 08:34:15PM +0200, Çağrı ULAŞ wrote: > > Working on autopkgtest but I have issues with deepnano. There are no man > > pages or example files I found. > > Did you tried -h/--help options that might be used with help2man? > > > Only bitbucket page have a basic usage but > > this is more different from classic alignment tools. > > If there is no chance with help2man you might try to find some simple > introduction how to write manpages (or check out a simple manpage on the > Debian system) and feed in the content of the bitbucket page. > > > I try to run with some > > .npz datas in nets_data directory. But give me an error 'Unable to open > > file (File signature not found)'. Anyway, .npz datas are numpy's > > uncompressed files according to scipy's docs. 'OMP_NUM_THREADS=1 > > deepnano_basecall' command uses fast5 files. Cant get any fast5 file. > Where > > can I get them, any ideas? > > * Asking upstream > * Asking Canberk how he found example files > * Hoping for hints of other readers here > > Sorry, I can not help myself since I'm not working as bioinformatican. > > > Nowadays, lots of work on me at university but I'll try to communicate > more > > often. > > OK. > > Kind regards > > Andreas. > > -- > http://fam-tille.de > > -- *Çağrı ULAŞ* about.me/cagriulas
