Hi Andreas,

I already started to make poretools-data package. Had to make some
practice on split packaging . It's almost done. When I finished
I will upload them both.

Regards.

2016-12-01 16:00 GMT+03:00 Andreas Tille <andr...@an3as.eu>:

> Hi Çağrı,
>
> I wonder whether Afif's hint how to get the example files might have
> been helpful for you.  I admit I'm not keen to stick to the monthly
> boundaries of the MoM projects but if deepnano should make it into
> stretch we need to hurry up a bit.
>
> Kind regards
>
>        Andreas.
>
> On Wed, Nov 16, 2016 at 11:50:43AM +0200, Çağrı ULAŞ wrote:
> > Hi Andreas,
> >
> > I finally find fast5 files from poretools which is an utility for
> > converting fast5 to fasta/fastq file. There are fast5 examples on
> > poretools' github page. Is there any thing we need to specify for this
> data
> > in debian directory?
> >
> > Regards
> >
> > 2016-11-12 1:01 GMT+03:00 Andreas Tille <andr...@an3as.eu>:
> >
> > > Hi,
> > >
> > > On Fri, Nov 11, 2016 at 08:34:15PM +0200, Çağrı ULAŞ wrote:
> > > > Working on autopkgtest but I have issues with deepnano. There are no
> man
> > > > pages or example files I found.
> > >
> > > Did you tried -h/--help options that might be used with help2man?
> > >
> > > > Only bitbucket page have a basic usage but
> > > > this is more different from classic alignment tools.
> > >
> > > If there is no chance with help2man you might try to find some simple
> > > introduction how to write manpages (or check out a simple manpage on
> the
> > > Debian system) and feed in the content of the bitbucket page.
> > >
> > > > I try to run with some
> > > > .npz datas in nets_data directory. But give me an error 'Unable to
> open
> > > > file (File signature not found)'. Anyway, .npz datas are numpy's
> > > > uncompressed files according to scipy's docs. 'OMP_NUM_THREADS=1
> > > > deepnano_basecall' command uses fast5 files. Cant get any fast5 file.
> > > Where
> > > > can I get them, any ideas?
> > >
> > >  * Asking upstream
> > >  * Asking Canberk how he found example files
> > >  * Hoping for hints of other readers here
> > >
> > > Sorry, I can not help myself since I'm not working as bioinformatican.
> > >
> > > > Nowadays, lots of work on me at university but I'll try to
> communicate
> > > more
> > > > often.
> > >
> > > OK.
> > >
> > > Kind regards
> > >
> > >       Andreas.
> > >
> > > --
> > > http://fam-tille.de
> > >
> > >
> >
> >
> > --
> > *Çağrı ULAŞ*
> > about.me/cagriulas
>
> --
> http://fam-tille.de
>
>


-- 
*Çağrı ULAŞ*
about.me/cagriulas

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