Hi Andreas, I push some changes for deepnano. Used a few poretools data for the deepnano-data because poretools use pybuild for packaging. When I create new package in control file (for split packaging) poretools package created with empty package. I dont want to change the way this package builded. Didn't find any useful example for python split packaging. Any ideas? Currently, this way test passed. I didn't use dch for now. What should I do next?
Regards 2016-12-14 11:40 GMT+03:00 Andreas Tille <[email protected]>: > Hi Çağrı, > > any news? > > Kind regards > > Andreas. > > On Fri, Dec 02, 2016 at 12:47:23AM +0300, Çağrı ULAŞ wrote: > > Hi Andreas, > > > > I already started to make poretools-data package. Had to make some > > practice on split packaging . It's almost done. When I finished > > I will upload them both. > > > > Regards. > > > > 2016-12-01 16:00 GMT+03:00 Andreas Tille <[email protected]>: > > > > > Hi Çağrı, > > > > > > I wonder whether Afif's hint how to get the example files might have > > > been helpful for you. I admit I'm not keen to stick to the monthly > > > boundaries of the MoM projects but if deepnano should make it into > > > stretch we need to hurry up a bit. > > > > > > Kind regards > > > > > > Andreas. > > > > > > On Wed, Nov 16, 2016 at 11:50:43AM +0200, Çağrı ULAŞ wrote: > > > > Hi Andreas, > > > > > > > > I finally find fast5 files from poretools which is an utility for > > > > converting fast5 to fasta/fastq file. There are fast5 examples on > > > > poretools' github page. Is there any thing we need to specify for > this > > > data > > > > in debian directory? > > > > > > > > Regards > > > > > > > > 2016-11-12 1:01 GMT+03:00 Andreas Tille <[email protected]>: > > > > > > > > > Hi, > > > > > > > > > > On Fri, Nov 11, 2016 at 08:34:15PM +0200, Çağrı ULAŞ wrote: > > > > > > Working on autopkgtest but I have issues with deepnano. There > are no > > > man > > > > > > pages or example files I found. > > > > > > > > > > Did you tried -h/--help options that might be used with help2man? > > > > > > > > > > > Only bitbucket page have a basic usage but > > > > > > this is more different from classic alignment tools. > > > > > > > > > > If there is no chance with help2man you might try to find some > simple > > > > > introduction how to write manpages (or check out a simple manpage > on > > > the > > > > > Debian system) and feed in the content of the bitbucket page. > > > > > > > > > > > I try to run with some > > > > > > .npz datas in nets_data directory. But give me an error 'Unable > to > > > open > > > > > > file (File signature not found)'. Anyway, .npz datas are numpy's > > > > > > uncompressed files according to scipy's docs. 'OMP_NUM_THREADS=1 > > > > > > deepnano_basecall' command uses fast5 files. Cant get any fast5 > file. > > > > > Where > > > > > > can I get them, any ideas? > > > > > > > > > > * Asking upstream > > > > > * Asking Canberk how he found example files > > > > > * Hoping for hints of other readers here > > > > > > > > > > Sorry, I can not help myself since I'm not working as > bioinformatican. > > > > > > > > > > > Nowadays, lots of work on me at university but I'll try to > > > communicate > > > > > more > > > > > > often. > > > > > > > > > > OK. > > > > > > > > > > Kind regards > > > > > > > > > > Andreas. > > > > > > > > > > -- > > > > > http://fam-tille.de > > > > > > > > > > > > > > > > > > > > > > -- > > > > *Çağrı ULAŞ* > > > > about.me/cagriulas > > > > > > -- > > > http://fam-tille.de > > > > > > > > > > > > -- > > *Çağrı ULAŞ* > > about.me/cagriulas > > -- > http://fam-tille.de > > -- *Çağrı ULAŞ* about.me/cagriulas
