Dear all, Happy New Year! :)
I am currently trying to provide a unit test for rapmap (closing bug n. 879616 <[email protected]>). The test until now, is just : 'pkg="rapmap" ln -s ~/spdlog/include/spdlog/ ~/${pkg}/include if [ "$AUTOPKGTEST_TMP" = "" ] ; then AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM fi cp -a ${pkg}/* $AUTOPKGTEST_TMP rapmap quasiindex -t transcripts.fasta -i sample_quasi_index' However, the build fails giving me the error : 'In file included from /tmp/autopkgtest.LNHf4Z/build.kpG/real-tree/src/RapMapIndexer.cpp:45:0: /tmp/autopkgtest.LNHf4Z/build.kpG/real-tree/include/RapMapUtils.hpp:34:29: fatal error: spdlog/fmt/ostr.h: No such file or directory compilation terminated. src/CMakeFiles/rapmap.dir/build.make:89: recipe for target 'src/CMakeFiles/rapmap.dir/RapMapIndexer.cpp.o' failed make[4]: *** [src/CMakeFiles/rapmap.dir/RapMapIndexer.cpp.o] Error 1' When i manually include a symbolic link to the file as ln -s ~/spdlog/include/spdlog/ ~/$rapmap/include the build succeeds However , when i include that line in the autopkgtest it fails. I have read that it is not possible to include symbolic links in an autopkgtest? I will keep searching for a solution to this, but any helpful hint would be appreciated :) Thank you all again!! Kate
