Dear Kate, On Wed, Jan 10, 2018 at 08:38:32PM +0200, Kalou.Katerina wrote: > Dear all, > > Happy New Year! :)
Thanks, same to you. > I am currently trying to provide a unit test for rapmap (closing bug n. > 879616 <[email protected]>). The test until now, is just : > > 'pkg="rapmap" > ln -s ~/spdlog/include/spdlog/ ~/${pkg}/include > > if [ "$AUTOPKGTEST_TMP" = "" ] ; then > AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` > trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM > fi > > cp -a ${pkg}/* $AUTOPKGTEST_TMP > rapmap quasiindex -t transcripts.fasta -i sample_quasi_index' > > However, the build fails giving me the error : > 'In file included from > /tmp/autopkgtest.LNHf4Z/build.kpG/real-tree/src/RapMapIndexer.cpp:45:0: > /tmp/autopkgtest.LNHf4Z/build.kpG/real-tree/include/RapMapUtils.hpp:34:29: > fatal error: spdlog/fmt/ostr.h: No such file or directory > compilation terminated. > src/CMakeFiles/rapmap.dir/build.make:89: recipe for target > 'src/CMakeFiles/rapmap.dir/RapMapIndexer.cpp.o' failed > make[4]: *** [src/CMakeFiles/rapmap.dir/RapMapIndexer.cpp.o] Error 1' > > When i manually include a symbolic link to the file as > ln -s ~/spdlog/include/spdlog/ ~/$rapmap/include > the build succeeds > > However , when i include that line in the autopkgtest it fails. I have read > that it is not possible to include symbolic links in an autopkgtest? I will > keep searching for a solution to this, but any helpful hint would be > appreciated :) Could you please commit your changes to Git to enable me having a look at the code. Otherwise I might misunderstand what you wrote. Thanks for working on this Andreas. -- http://fam-tille.de
