Hi, On 02/21/2013 11:32 AM, Mathieu Bourgey wrote: > Hi Sebastien, > > I would like to try the -gene-ontology option of ray, but I didn't find > in the in the http://www.ebi.ac.uk/GOA/ a file that contains both the > embl_CDS and the GO IDs that I could use to generate the annotation file > needed for this option. > Perhaps I miss something in the website or I missunderstood what the > annotation file should be ! > > Could give me more details on how I can generate the annotation file ?
There is a tool to automate this process for you and its available in this repository: https://github.com/sebhtml/Paper-Replication-2012/tree/master/Build-Input-Files-for-Gene-Ontology This was a requirement of the Editor at Genome Biology. > > Thanks in advance > > Mathieu > ------------------------------------------------------------------------------ Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
