On 02/21/2013 03:34 PM, Egon Ozer wrote: > Sorry if this is a silly question. > > Is there an easy way to tell how many of the input reads were used in an > assembly without outputting an AMOS file?
No, not at the moment. There is a opened ticket to add this feature. > Can the numbers of k-mers in the de Bruijn graph found in > CoverageDistributionAnalysis.txt be multiplied by the k-mer size and >divided by the read length to get an estimate, or am I thinking of that wrong? I don't think this will give you a good estimate. > > Thanks, > - Egon > ------------------------------------------------------------------------------ > Everyone hates slow websites. So do we. > Make your web apps faster with AppDynamics > Download AppDynamics Lite for free today: > http://p.sf.net/sfu/appdyn_d2d_feb > _______________________________________________ > Denovoassembler-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/denovoassembler-users > ------------------------------------------------------------------------------ Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
