So it's basically a 2-column file and each taxon is reported with its full path to the root in the taxonomy tree, right ?
On 03/04/2013 08:29 PM, James Vincent wrote: > It is the same information, but I don't believe there is a standard. > It's normally a tsv file with an abundance measure (like Ray already > gives) except the full taxonomy hierarchy is given for each row. For > example the 0.Profile,... species file would have not just the species > listed on each line but the full taxonomic ranks back to kingdom for > that species. These files can be manipulated into various formats for > different tools, but the key is having the full taxonomy. > > Jim > > On Mon, Mar 4, 2013 at 11:00 AM, Sébastien Boisvert > <[email protected]> wrote: >> On 03/03/2013 06:42 PM, jjv5 wrote: >>> Hello, >>> >>> The individual output taxonomy files at the various levels (order, >>> class etc) are nice. We would like to visualize the full taxonomic >>> profiles with Krona. Would it be possible to generate an abundance >>> table with full taxonomic ranks for each abundance, similar to a plain >>> OTU file or the output of MetaPhlan? >> >> Is the OTU file format similar to the BIOM format ? >> >> >>> These could then be imported to >>> Krona. >>> >>> Thanks, >>> Jim >>> >>> ------------------------------------------------------------------------------ >>> Everyone hates slow websites. So do we. >>> Make your web apps faster with AppDynamics >>> Download AppDynamics Lite for free today: >>> http://p.sf.net/sfu/appdyn_d2d_feb >>> _______________________________________________ >>> Denovoassembler-users mailing list >>> [email protected] >>> https://lists.sourceforge.net/lists/listinfo/denovoassembler-users >>> >> >> >> ------------------------------------------------------------------------------ >> Everyone hates slow websites. So do we. >> Make your web apps faster with AppDynamics >> Download AppDynamics Lite for free today: >> http://p.sf.net/sfu/appdyn_d2d_feb >> _______________________________________________ >> Denovoassembler-users mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/denovoassembler-users ------------------------------------------------------------------------------ Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
