On 30/05/13 09:11 PM, Susan Miller wrote: > Does Ray work with fasta input files? More specifically, would it work > with a "fastq" file that was really in fasta format (missing the quality > value lines?)
No. Anyway that does not sound like a fastq file. > I'm asking because I'm running khmer digital > normalization http://khmer.readthedocs.org/en/latest/introduction.html > on an Illumina HiSeq2000 data set, and the strip-and-split-for-assembly > script in the khmer package strips out quality info when it is > separating paired reads from singles. > > Thank you, > Susan Miller > ARL BioComputing > > > ------------------------------------------------------------------------------ > Get 100% visibility into Java/.NET code with AppDynamics Lite > It's a free troubleshooting tool designed for production > Get down to code-level detail for bottlenecks, with <2% overhead. > Download for free and get started troubleshooting in minutes. > http://p.sf.net/sfu/appdyn_d2d_ap2 > _______________________________________________ > Denovoassembler-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/denovoassembler-users > ------------------------------------------------------------------------------ Get 100% visibility into Java/.NET code with AppDynamics Lite It's a free troubleshooting tool designed for production Get down to code-level detail for bottlenecks, with <2% overhead. Download for free and get started troubleshooting in minutes. http://p.sf.net/sfu/appdyn_d2d_ap2 _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
