Hello,
For MG-RAST upload it has two problems from Ray outputs.
The space between contig and number with unique sequence number for
example.
>contig-3000000 508 nucleotides
And, it needs coverage information for
>sequence_number_1_*[cov=2]*
CTAGCGCACATAGCATTCAGCGTAGCAGTCACTAGTACGTAGTACGTACC
>sequence_number_2_*[cov=4]*
ACGTAGCTCACTCCAGTAGCAGGTACGTCGAGAAGACGTCTAGTCATCAT
I was wondering if there was a quick command to add the coverage
information to the contig file and remove the space.
Cheers and many thanks
Rick
--
Richard Allen White III M.S.
PhD Candidate - Suttle Lab
Department of Microbiology & Immunology
The University of British Columbia
Vancouver, BC, Canada
cell. 604-440-5150
http://www.ocgy.ubc.ca/~suttle/
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