> Regarding your patch, do you always expect a valley ? Well, the patch always expects a valley.
In general, yes. For very low coverage (e.g. <10), I guess it would be possible for the number of errors to be so low that an initial valley doesn't happen, but I expect that to be unusual and require a crazy high accuracy of sequencing (e.g. Sanger sequencing if the start and end rubbish were discarded). See Rick Westerman's previous list posting about kmer errors for more details: http://sourceforge.net/p/denovoassembler/mailman/message/31968896/ - D ------------------------------------------------------------------------------ Learn Graph Databases - Download FREE O'Reilly Book "Graph Databases" is the definitive new guide to graph databases and their applications. Written by three acclaimed leaders in the field, this first edition is now available. Download your free book today! http://p.sf.net/sfu/13534_NeoTech _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
