Hi, sorry, there was no free time left in December for this issue, but I will be able to provide the patches in January (for real).
Best, Peter Am 24.11.2015 um 11:37 schrieb Azad Dehghan: > This is on my todo list for Dec. as well. If there are any more volunteers > for translating JAPE to RUTA, please get in touch. > > Cheers, > Azad > > On 24 Nov 2015 09:55, "Peter Klügl" <peter.klu...@averbis.com> wrote: >> Hi, >> >> I just wanted to mention that I haven't forgot about it. Unfortunately, >> there is just no spare time right now. I hope I will be able to provide >> the patches in December. >> >> Best, >> >> Peter >> >> Am 06.11.2015 um 16:40 schrieb Pei Chen: >>> Hi Peter, >>> I think the ctakes-examples is probably a good starting point at least >>> in terms of maven modules, etc. I think it would be good if we use >>> uimaFIT style as primary approach to wiring components together and >>> generate desc's as secondary... >>> I think the actual components that would be required is probably best >>> left up to what is actually required for best performing c-deid. The >>> output would be interesting, I'm not sure if we should treat this as >>> an independent preprocessing component or part of a pipeline (in which >>> case, we may need to propose a change to the type system or perhaps an >>> alternative JCas view. You can probably open up that discussion to >>> the dev group as you see fit.) >>> >>> My 2 cents... >>> >>> >>> On Fri, Nov 6, 2015 at 3:38 AM, Peter Klügl <peter.klu...@averbis.com> > wrote: >>>> Hi, >>>> >>>> Is there a cTAKES project that may serve as an example on how the > cTAKES >>>> community develops or how a project should look like? >>>> I learned that different people set up UIMA project in a quite > different >>>> manner and I do not what to get inspired by "some sort of out-dated" >>>> approach in the cTAKES repo. >>>> >>>> Are there restriction or preferences about the preprocessing components >>>> that should be used and the kind of "output" of the project. >>>> Components: On which components may the componetns rely: tokenizer, ... >>>> parser, ... dict lookup? >>>> "output": Should the project provide a pipeline or a single AE? >>>> >>>> More comments below. >>>> >>>> Am 03.11.2015 um 16:54 schrieb Azad Dehghan: >>>>>> Who else plans to provide patches for it? Just to avoid duplicate > work >>>>>> and to coordnate the efforts ... >>>>>> >>>>> I would like to help with the translating JAPE to RUTA. >>>> You can already go ahead with the UIMA Ruta Workbench if you want, or >>>> wait until I set up the project with ruta integration. >>>> >>>> If any questions arise, just ask :-) >>>> >>>>>> Is there a development dataset which was utilized for the initial >>>>>> development, and if yes, is it possible to contribute it too? >>>>>> >>>>> The data set is unfortunately not publicly available; i2b2 >>>>> <https://www.i2b2.org/NLP/DataSets/Main.php> typically releases the > data >>>>> sets 12 months after a given challenge; this is done on an individual > basis >>>>> and involve a Data Use Agreement. >>>>> >>>>> However, I will be able to conduct and coordinate the validation. >>>>> >>>> Ok, I'll investigate if we have already access to the dataset here. >>>> >>>> >>>>>> My first step would be: >>>>>> - set up a maven project >>>>>> - set up a development pipeline in a test (with cTAKES components >>>>>> replacing the previous ANNIE preprocessing) >>>>>> >>>>>> >>>>>> But one item that we need to review is the 3rd party libs jars that >>>>>> were included to ensure compatibility. I’ll be sure to take a look > at >>>>>> that over the next few weeks. >>>>>> >>>>>> —Pei >>>>>> >>>>>> >>>>> @Pei - once ANNIE components are replaced there is should not be a > need to >>>>> worry about the 3rd party libs. >>>>> >>>>> Also, just a thought: we may want to create an independent component > for >>>>> the Two Pass recognition (TwoPass.java) as this method have shown > useful >>>>> for general NER on longitudinal data and surely useful independent of > the >>>>> deid component. >>>>> >>>>> >>>>> Cheers, >>>>> Azad >>>>>
