Three NERs translated and uploaded. PS. I will validate all NERs once we have them all completed.
Cheers, Azad On 24 November 2015 at 10:37, Azad Dehghan <azad.dehg...@gmail.com> wrote: > This is on my todo list for Dec. as well. If there are any more volunteers > for translating JAPE to RUTA, please get in touch. > > Cheers, > Azad > > On 24 Nov 2015 09:55, "Peter Klügl" <peter.klu...@averbis.com> wrote: > > > > Hi, > > > > I just wanted to mention that I haven't forgot about it. Unfortunately, > > there is just no spare time right now. I hope I will be able to provide > > the patches in December. > > > > Best, > > > > Peter > > > > Am 06.11.2015 um 16:40 schrieb Pei Chen: > > > Hi Peter, > > > I think the ctakes-examples is probably a good starting point at least > > > in terms of maven modules, etc. I think it would be good if we use > > > uimaFIT style as primary approach to wiring components together and > > > generate desc's as secondary... > > > I think the actual components that would be required is probably best > > > left up to what is actually required for best performing c-deid. The > > > output would be interesting, I'm not sure if we should treat this as > > > an independent preprocessing component or part of a pipeline (in which > > > case, we may need to propose a change to the type system or perhaps an > > > alternative JCas view. You can probably open up that discussion to > > > the dev group as you see fit.) > > > > > > My 2 cents... > > > > > > > > > On Fri, Nov 6, 2015 at 3:38 AM, Peter Klügl <peter.klu...@averbis.com> > wrote: > > >> Hi, > > >> > > >> Is there a cTAKES project that may serve as an example on how the > cTAKES > > >> community develops or how a project should look like? > > >> I learned that different people set up UIMA project in a quite > different > > >> manner and I do not what to get inspired by "some sort of out-dated" > > >> approach in the cTAKES repo. > > >> > > >> Are there restriction or preferences about the preprocessing > components > > >> that should be used and the kind of "output" of the project. > > >> Components: On which components may the componetns rely: tokenizer, > ... > > >> parser, ... dict lookup? > > >> "output": Should the project provide a pipeline or a single AE? > > >> > > >> More comments below. > > >> > > >> Am 03.11.2015 um 16:54 schrieb Azad Dehghan: > > >>>> > > >>>> Who else plans to provide patches for it? Just to avoid duplicate > work > > >>>> and to coordnate the efforts ... > > >>>> > > >>> I would like to help with the translating JAPE to RUTA. > > >> You can already go ahead with the UIMA Ruta Workbench if you want, or > > >> wait until I set up the project with ruta integration. > > >> > > >> If any questions arise, just ask :-) > > >> > > >>>> Is there a development dataset which was utilized for the initial > > >>>> development, and if yes, is it possible to contribute it too? > > >>>> > > >>> The data set is unfortunately not publicly available; i2b2 > > >>> <https://www.i2b2.org/NLP/DataSets/Main.php> typically releases the > data > > >>> sets 12 months after a given challenge; this is done on an > individual basis > > >>> and involve a Data Use Agreement. > > >>> > > >>> However, I will be able to conduct and coordinate the validation. > > >>> > > >> Ok, I'll investigate if we have already access to the dataset here. > > >> > > >> > > >>>> My first step would be: > > >>>> - set up a maven project > > >>>> - set up a development pipeline in a test (with cTAKES components > > >>>> replacing the previous ANNIE preprocessing) > > >>>> > > >>>> > > >>>> But one item that we need to review is the 3rd party libs jars that > > >>>> were included to ensure compatibility. I’ll be sure to take a look > at > > >>>> that over the next few weeks. > > >>>> > > >>>> —Pei > > >>>> > > >>>> > > >>> @Pei - once ANNIE components are replaced there is should not be a > need to > > >>> worry about the 3rd party libs. > > >>> > > >>> Also, just a thought: we may want to create an independent component > for > > >>> the Two Pass recognition (TwoPass.java) as this method have shown > useful > > >>> for general NER on longitudinal data and surely useful independent > of the > > >>> deid component. > > >>> > > >>> > > >>> Cheers, > > >>> Azad > > >>> > > >
