Hi, great. I will integrate them in the project and in the next patch.
Best, Peter Am 18.01.2016 um 00:58 schrieb Azad Dehghan: > Three NERs translated and uploaded. > > PS. I will validate all NERs once we have them all completed. > > Cheers, > Azad > > On 24 November 2015 at 10:37, Azad Dehghan <azad.dehg...@gmail.com> wrote: > >> This is on my todo list for Dec. as well. If there are any more volunteers >> for translating JAPE to RUTA, please get in touch. >> >> Cheers, >> Azad >> >> On 24 Nov 2015 09:55, "Peter Klügl" <peter.klu...@averbis.com> wrote: >>> Hi, >>> >>> I just wanted to mention that I haven't forgot about it. Unfortunately, >>> there is just no spare time right now. I hope I will be able to provide >>> the patches in December. >>> >>> Best, >>> >>> Peter >>> >>> Am 06.11.2015 um 16:40 schrieb Pei Chen: >>>> Hi Peter, >>>> I think the ctakes-examples is probably a good starting point at least >>>> in terms of maven modules, etc. I think it would be good if we use >>>> uimaFIT style as primary approach to wiring components together and >>>> generate desc's as secondary... >>>> I think the actual components that would be required is probably best >>>> left up to what is actually required for best performing c-deid. The >>>> output would be interesting, I'm not sure if we should treat this as >>>> an independent preprocessing component or part of a pipeline (in which >>>> case, we may need to propose a change to the type system or perhaps an >>>> alternative JCas view. You can probably open up that discussion to >>>> the dev group as you see fit.) >>>> >>>> My 2 cents... >>>> >>>> >>>> On Fri, Nov 6, 2015 at 3:38 AM, Peter Klügl <peter.klu...@averbis.com> >> wrote: >>>>> Hi, >>>>> >>>>> Is there a cTAKES project that may serve as an example on how the >> cTAKES >>>>> community develops or how a project should look like? >>>>> I learned that different people set up UIMA project in a quite >> different >>>>> manner and I do not what to get inspired by "some sort of out-dated" >>>>> approach in the cTAKES repo. >>>>> >>>>> Are there restriction or preferences about the preprocessing >> components >>>>> that should be used and the kind of "output" of the project. >>>>> Components: On which components may the componetns rely: tokenizer, >> ... >>>>> parser, ... dict lookup? >>>>> "output": Should the project provide a pipeline or a single AE? >>>>> >>>>> More comments below. >>>>> >>>>> Am 03.11.2015 um 16:54 schrieb Azad Dehghan: >>>>>>> Who else plans to provide patches for it? Just to avoid duplicate >> work >>>>>>> and to coordnate the efforts ... >>>>>>> >>>>>> I would like to help with the translating JAPE to RUTA. >>>>> You can already go ahead with the UIMA Ruta Workbench if you want, or >>>>> wait until I set up the project with ruta integration. >>>>> >>>>> If any questions arise, just ask :-) >>>>> >>>>>>> Is there a development dataset which was utilized for the initial >>>>>>> development, and if yes, is it possible to contribute it too? >>>>>>> >>>>>> The data set is unfortunately not publicly available; i2b2 >>>>>> <https://www.i2b2.org/NLP/DataSets/Main.php> typically releases the >> data >>>>>> sets 12 months after a given challenge; this is done on an >> individual basis >>>>>> and involve a Data Use Agreement. >>>>>> >>>>>> However, I will be able to conduct and coordinate the validation. >>>>>> >>>>> Ok, I'll investigate if we have already access to the dataset here. >>>>> >>>>> >>>>>>> My first step would be: >>>>>>> - set up a maven project >>>>>>> - set up a development pipeline in a test (with cTAKES components >>>>>>> replacing the previous ANNIE preprocessing) >>>>>>> >>>>>>> >>>>>>> But one item that we need to review is the 3rd party libs jars that >>>>>>> were included to ensure compatibility. I’ll be sure to take a look >> at >>>>>>> that over the next few weeks. >>>>>>> >>>>>>> —Pei >>>>>>> >>>>>>> >>>>>> @Pei - once ANNIE components are replaced there is should not be a >> need to >>>>>> worry about the 3rd party libs. >>>>>> >>>>>> Also, just a thought: we may want to create an independent component >> for >>>>>> the Two Pass recognition (TwoPass.java) as this method have shown >> useful >>>>>> for general NER on longitudinal data and surely useful independent >> of the >>>>>> deid component. >>>>>> >>>>>> >>>>>> Cheers, >>>>>> Azad >>>>>>
