Happy to clarify. The detailed (and rather hard to read, we apologize) full specification is at http://www.commonwl.org/v1.0/CommandLineTool.html
In this instance the user guide is (correctly) referring to the construction of the command line. I was referring to the order of the fields within a CWL document which is what I think you were also talking about. On Tue, Aug 9, 2016 at 7:18 PM, GaleN <[email protected]> wrote: > Hi Michael, thank you for the clarification! I was only going by "A Gentle > Introduction to the Common Workflow Language" (see link below). I'm > (obviously) new to CWL and don't yet know which resources are most > accurate, so thanks for jumping in to correct me! > > Thilina, What I meant was that the very last line at the end of section 2.2 > in http://www.commonwl.org/draft-3/UserGuide.html says: > > "The baseCommand field always comes before parameters." > > However, Michael has clarified that the order doesn't matter. > > Gale > > On Tue, Aug 9, 2016 at 9:11 AM GaleN <[email protected]> wrote: > > > Yes, I was looking at the older branch. I'll put future suggestions on > > GitHub. > > > > On Fri, Aug 5, 2016, 10:10 PM Thilina Manamgoda <[email protected]> > > wrote: > > > >> Hi, > >> > >> Yes it should. What you meant by "Also, I notice in this CWL User > Guide ( > >> http://www.commonwl.org/draft-3/UserGuide.html ) it says the > basecommand > >> field comes before the input and output parameters." ? > >> > >> Thilina. > >> > > > -- Michael R. Crusoe Community Engineer & Co-founder Common Workflow Language project https://impactstory.org/u/0000-0002-2961-9670 [email protected] +40 720 781 765 +1 480 627 9108
