Hi! One of the participants of the upcoming workshop in which I am a lead instructor has problems with the setup. The output from our diagnostic script is below (issues with pyzmq and MayaVi). Also:
"I think part of the problem is that I have both Python 2 and 3 installed, and 2 is the default. I got this output by running python3 specifically with: python3 swc-installation-test-2.py rather than just 'python'. " [don't think this is necessarily the issue here] Not sure if the participant installed Anaconda. I'm guessing that probably yes considering the amount of stuff that the setup script finds (?). Looking at [1] pyzmq should come with Anaconda but MayaVi not necessarily? Can anyone help? Thank you! Aleksandra [1] http://docs.continuum.io/anaconda/changelog ====OUTPUT==== check command line shell (virtual-shell)... pass check text/code editor (virtual-editor)... pass check web browser (virtual-browser)... pass check Git (git)... pass check Mercurial (hg)... pass check EasyMercurial... pass check make... pass check PyPI installer (virtual-pypi-installer)... pass check Setuptools (setuptools)... pass check Nose (nosetests)... pass check Nose Python package (nose)... pass check py.test... pass check pytest Python package (pytest)... pass check SQLite 3 (sqlite3)... pass check SQLite Python package (sqlite3-python)... pass check Python version (python)... pass check IPython script (ipython)... pass check IPython Python package (IPython)... fail check Argparse (argparse)... pass check NumPy (numpy)... pass check SciPy (scipy)... pass check Matplotlib (matplotlib)... pass check Pandas (pandas)... pass check SymPy (sympy)... pass check Cython... pass check NetworkX (networkx)... pass check MayaVi (mayavi.mlab)... fail Successes: command line shell (virtual-shell) Bourne Again Shell (bash) 4.3.11 text/code editor (virtual-editor) vi 7.4 web browser (virtual-browser) Firefox (firefox) 42.0 Git (git) 1.9.1 Mercurial (hg) 2.8.2 EasyMercurial 1.3 make 3.81 PyPI installer (virtual-pypi-installer) Setuptools easy_install (easy_install) 3.3 Setuptools (setuptools) 3.3 Nose (nosetests) 1.3.7 Nose Python package (nose) 1.3.1 py.test 2.8.3 pytest Python package (pytest) 2.5.1 SQLite 3 (sqlite3) 3.9.2 SQLite Python package (sqlite3-python) 3.4.3 (default, Oct 14 2015, 20:33:09) [GCC 4.8.4] Python version (python) 3.4.3 (default, Oct 14 2015, 20:33:09) [GCC 4.8.4] IPython script (ipython) 1.2.1 Argparse (argparse) 1.1 NumPy (numpy) 1.8.2 SciPy (scipy) 0.13.3 Matplotlib (matplotlib) 1.3.1 Pandas (pandas) 0.13.1 SymPy (sympy) 0.7.6.1 Cython 0.20.1post0 NetworkX (networkx) 1.8.1 Failures: check for IPython Python package (IPython) failed: some dependencies for IPython Python package (IPython) were not satisfied For instructions on installing an up-to-date version, see http://ipython.org/install.html causes: check for PyZMQ (pyzmq) failed: could not import the 'zmq' package for PyZMQ (pyzmq) For instructions on installing an up-to-date version, see https://github.com/zeromq/pyzmq/wiki/Building-and-Installing-PyZMQ check for MayaVi (mayavi.mlab) failed: could not import the 'mayavi.mlab' package for MayaVi (mayavi.mlab) For instructions on installing an up-to-date version, see http://docs.enthought.com/mayavi/mayavi/installation.html If you do not understand why the above failures occurred, copy and send the *entire* output (all info above and summary below) to the instructor for help. ================== System information ================== os.name : posix os.uname : uname_result(system='Linux', node='eee', release='3.13.0-68-generic', version='#111-Ubuntu SMP Fri Nov 6 18:18:09 UTC 2015', machine='i686', processor='i686') platform : linux platform+ : Linux-3.13.0-68-generic-i686-with-Ubuntu-14.04-trusty linux_distribution : ('Ubuntu', '14.04', 'trusty') prefix : /usr exec_prefix : /usr executable : /usr/bin/python3 version_info : sys.version_info(major=3, minor=4, micro=3, releaselevel='final', serial=0) version : 3.4.3 (default, Oct 14 2015, 20:33:09) [GCC 4.8.4] environment : CLUTTER_IM_MODULE=xim COLORTERM=gnome-terminal COMPIZ_BIN_PATH=/usr/bin/ COMPIZ_CONFIG_PROFILE=ubuntu DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-TBTQVhqJVU DEFAULTS_PATH=/usr/share/gconf/ubuntu.default.path DESKTOP_SESSION=ubuntu DISPLAY=:0 GDMSESSION=ubuntu GDM_LANG=en_GB GNOME_DESKTOP_SESSION_ID=this-is-deprecated GNOME_KEYRING_CONTROL=/run/user/1000/keyring-ei9J9V GNOME_KEYRING_PID=1700 GPG_AGENT_INFO=/run/user/1000/keyring-ei9J9V/gpg:0:1 GTK_IM_MODULE=ibus GTK_MODULES=canberra-gtk-module:canberra-gtk-module:overlay-scrollbar:unity-gtk-module HOME=/home/eaj IM_CONFIG_PHASE=1 INSTANCE= JOB=dbus LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LESSCLOSE=/usr/bin/lesspipe %s %s LESSOPEN=| /usr/bin/lesspipe %s LOGNAME=eaj LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36: MANDATORY_PATH=/usr/share/gconf/ubuntu.mandatory.path OLDPWD=/home/eaj PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/home/eaj/Documents/SwC2015 QT4_IM_MODULE=xim QT_IM_MODULE=ibus QT_QPA_PLATFORMTHEME=appmenu-qt5 SELINUX_INIT=YES SESSION=ubuntu SESSIONTYPE=gnome-session SESSION_MANAGER=local/eee:@/tmp/.ICE-unix/1868,unix/eee:/tmp/.ICE-unix/1868 SHELL=/bin/bash SHLVL=1 SSH_AUTH_SOCK=/run/user/1000/keyring-ei9J9V/ssh TERM=xterm TEXTDOMAIN=im-config TEXTDOMAINDIR=/usr/share/locale/ UPSTART_SESSION=unix:abstract=/com/ubuntu/upstart-session/1000/1702 USER=eaj VTE_VERSION=3409 WINDOWID=46137355 XAUTHORITY=/home/eaj/.Xauthority XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/usr/share/upstart/xdg:/etc/xdg XDG_CURRENT_DESKTOP=Unity XDG_DATA_DIRS=/usr/share/ubuntu:/usr/share/gnome:/usr/local/share/:/usr/share/ XDG_GREETER_DATA_DIR=/var/lib/lightdm-data/eaj XDG_MENU_PREFIX=gnome- XDG_RUNTIME_DIR=/run/user/1000 XDG_SEAT=seat0 XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0 XDG_SESSION_ID=c2 XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0 XDG_VTNR=7 XMODIFIERS=@im=ibus _=/usr/bin/python3 ================== For suggestions on installing missing packages, see http://software-carpentry.org/setup/ For instructings on installing a particular package, see the failure message for that package printed above. For help, email the *entire* output of this script to your instructor.
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