I think we should remove MayaVi from the installer completely - honestly
don't know the last time anyone used it in a workshop. Don't know about
pyzmq, but doesn't it come with the notebook these days anyway?
On 2015-12-03 12:22 PM, Aleksandra Pawlik wrote:
Hi!
One of the participants of the upcoming workshop in which I am a lead
instructor has problems with the setup. The output from our diagnostic
script is below (issues with pyzmq and MayaVi). Also:
"I think part of the problem is that I have both Python 2 and 3
installed, and 2 is the default. I got this output by running python3
specifically with:
python3 swc-installation-test-2.py
rather than just 'python'. " [don't think this is necessarily the
issue here]
Not sure if the participant installed Anaconda. I'm guessing that
probably yes considering the amount of stuff that the setup script
finds (?). Looking at [1] pyzmq should come with Anaconda but MayaVi
not necessarily?
Can anyone help?
Thank you!
Aleksandra
[1] http://docs.continuum.io/anaconda/changelog
====OUTPUT====
check command line shell (virtual-shell)...pass
check text/code editor (virtual-editor)...pass
check web browser (virtual-browser)...pass
check Git (git)...pass
check Mercurial (hg)...pass
check EasyMercurial...pass
check make...pass
check PyPI installer (virtual-pypi-installer)...pass
check Setuptools (setuptools)...pass
check Nose (nosetests)...pass
check Nose Python package (nose)...pass
check py.test...pass
check pytest Python package (pytest)...pass
check SQLite 3 (sqlite3)...pass
check SQLite Python package (sqlite3-python)...pass
check Python version (python)...pass
check IPython script (ipython)...pass
check IPython Python package (IPython)...fail
check Argparse (argparse)...pass
check NumPy (numpy)...pass
check SciPy (scipy)...pass
check Matplotlib (matplotlib)...pass
check Pandas (pandas)...pass
check SymPy (sympy)...pass
check Cython...pass
check NetworkX (networkx)...pass
check MayaVi (mayavi.mlab)...fail
Successes:
command line shell (virtual-shell) Bourne Again Shell (bash) 4.3.11
text/code editor (virtual-editor) vi 7.4
web browser (virtual-browser) Firefox (firefox) 42.0
Git (git) 1.9.1
Mercurial (hg) 2.8.2
EasyMercurial 1.3
make 3.81
PyPI installer (virtual-pypi-installer) Setuptools easy_install
(easy_install) 3.3
Setuptools (setuptools) 3.3
Nose (nosetests) 1.3.7
Nose Python package (nose) 1.3.1
py.test 2.8.3
pytest Python package (pytest) 2.5.1
SQLite 3 (sqlite3) 3.9.2
SQLite Python package (sqlite3-python) 3.4.3 (default, Oct 14 2015,
20:33:09)
[GCC 4.8.4]
Python version (python) 3.4.3 (default, Oct 14 2015, 20:33:09)
[GCC 4.8.4]
IPython script (ipython) 1.2.1
Argparse (argparse) 1.1
NumPy (numpy) 1.8.2
SciPy (scipy) 0.13.3
Matplotlib (matplotlib) 1.3.1
Pandas (pandas) 0.13.1
SymPy (sympy) 0.7.6.1
Cython 0.20.1post0
NetworkX (networkx) 1.8.1
Failures:
check for IPython Python package (IPython) failed:
some dependencies for IPython Python package (IPython) were not
satisfied
For instructions on installing an up-to-date version, see
http://ipython.org/install.html
causes:
check for PyZMQ (pyzmq) failed:
could not import the 'zmq' package for PyZMQ (pyzmq)
For instructions on installing an up-to-date version, see
https://github.com/zeromq/pyzmq/wiki/Building-and-Installing-PyZMQ
check for MayaVi (mayavi.mlab) failed:
could not import the 'mayavi.mlab' package for MayaVi (mayavi.mlab)
For instructions on installing an up-to-date version, see
http://docs.enthought.com/mayavi/mayavi/installation.html
If you do not understand why the above failures occurred,
copy and send the *entire* output (all info above and summary
below) to the instructor for help.
==================
System information
==================
os.name : posix
os.uname : uname_result(system='Linux', node='eee',
release='3.13.0-68-generic', version='#111-Ubuntu SMP Fri Nov 6
18:18:09 UTC 2015', machine='i686', processor='i686')
platform : linux
platform+ : Linux-3.13.0-68-generic-i686-with-Ubuntu-14.04-trusty
linux_distribution : ('Ubuntu', '14.04', 'trusty')
prefix : /usr
exec_prefix : /usr
executable : /usr/bin/python3
version_info : sys.version_info(major=3, minor=4, micro=3,
releaselevel='final', serial=0)
version : 3.4.3 (default, Oct 14 2015, 20:33:09)
[GCC 4.8.4]
environment :
CLUTTER_IM_MODULE=xim
COLORTERM=gnome-terminal
COMPIZ_BIN_PATH=/usr/bin/
COMPIZ_CONFIG_PROFILE=ubuntu
DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-TBTQVhqJVU
DEFAULTS_PATH=/usr/share/gconf/ubuntu.default.path
DESKTOP_SESSION=ubuntu
DISPLAY=:0
GDMSESSION=ubuntu
GDM_LANG=en_GB
GNOME_DESKTOP_SESSION_ID=this-is-deprecated
GNOME_KEYRING_CONTROL=/run/user/1000/keyring-ei9J9V
GNOME_KEYRING_PID=1700
GPG_AGENT_INFO=/run/user/1000/keyring-ei9J9V/gpg:0:1
GTK_IM_MODULE=ibus
GTK_MODULES=canberra-gtk-module:canberra-gtk-module:overlay-scrollbar:unity-gtk-module
HOME=/home/eaj
IM_CONFIG_PHASE=1
INSTANCE=
JOB=dbus
LANG=en_GB.UTF-8
LANGUAGE=en_GB:en
LESSCLOSE=/usr/bin/lesspipe %s %s
LESSOPEN=| /usr/bin/lesspipe %s
LOGNAME=eaj
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:
MANDATORY_PATH=/usr/share/gconf/ubuntu.mandatory.path
OLDPWD=/home/eaj
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
PWD=/home/eaj/Documents/SwC2015
QT4_IM_MODULE=xim
QT_IM_MODULE=ibus
QT_QPA_PLATFORMTHEME=appmenu-qt5
SELINUX_INIT=YES
SESSION=ubuntu
SESSIONTYPE=gnome-session
SESSION_MANAGER=local/eee:@/tmp/.ICE-unix/1868,unix/eee:/tmp/.ICE-unix/1868
SHELL=/bin/bash
SHLVL=1
SSH_AUTH_SOCK=/run/user/1000/keyring-ei9J9V/ssh
TERM=xterm
TEXTDOMAIN=im-config
TEXTDOMAINDIR=/usr/share/locale/
UPSTART_SESSION=unix:abstract=/com/ubuntu/upstart-session/1000/1702
USER=eaj
VTE_VERSION=3409
WINDOWID=46137355
XAUTHORITY=/home/eaj/.Xauthority
XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/usr/share/upstart/xdg:/etc/xdg
XDG_CURRENT_DESKTOP=Unity
XDG_DATA_DIRS=/usr/share/ubuntu:/usr/share/gnome:/usr/local/share/:/usr/share/
XDG_GREETER_DATA_DIR=/var/lib/lightdm-data/eaj
XDG_MENU_PREFIX=gnome-
XDG_RUNTIME_DIR=/run/user/1000
XDG_SEAT=seat0
XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0
XDG_SESSION_ID=c2
XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0
XDG_VTNR=7
XMODIFIERS=@im=ibus
_=/usr/bin/python3
==================
For suggestions on installing missing packages, see
http://software-carpentry.org/setup/
For instructings on installing a particular package,
see the failure message for that package printed above.
For help, email the *entire* output of this script to
your instructor.
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--
Dr. Greg Wilson | [email protected]
Software Carpentry | http://software-carpentry.org
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