> I believe this is a new issue in 1.9, not 1.8 as the subject says, 
correct?

Correct, apologies. (I meant to write "since 1.8" as "1.9" is either 
ambiguous or not released yet.)
 
> Is the "man-page of pycompile you can exclude certain packages" 
suggestion some change we should make in Django?

Not really; it would simply be moving the special-casing around a bit.

> at least project_template would be missing etc

Deliberately so; these are not invalid .py files.


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