Hi Ake, But howcome that I was able to compile GCC 8.3 :
GCC: GCC/8.3.0, GCC/11.2.0, GCC/11.3.0 Those versions did compile on my system? Borut On Wed, 2023-10-25 at 08:45 +0000, Åke Sandgren wrote: > Building GCC 10.3 on a Ubuntu 22.04 system would require some > difficult patching, it's just too old for the OS and binutils used so > don't even try. > > ________________________________________ > From: > [email protected] <[email protected]> > on behalf of Borut Rozman <[email protected]> > Sent: Wednesday, October 25, 2023 10:32 > To: [email protected] > Subject: Re: [easybuild] Bowtie2 2.3.5.1 with gcc 11.3.0 > > Hi Loris, > > No I didn't, I used parameters --optarch=GENERIC --robot but it > failed. > > For instance, at this moment I am trying to build GCC/10.3.0 and I > get > this error : > > > == 2023-10-25 08:20:03,546 build_log.py:171 ERROR EasyBuild crashed > with an error (at easybuild/base/exceptions.py:126 in __init__): cmd > " > ./configure --prefix=/apps/tmp/GCCcore/10.3.0/system-system/gcc- > 10.3.0/stage2_stuff --with-pic --disable-shared --enable-cxx -- > enable- > fat --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu" exited > with exit code 1 and output: > checking build system type... x86_64-pc-linux-gnu > checking host system type... x86_64-pc-linux-gnu > checking for a BSD-compatible install... /usr/bin/install -c > checking whether build environment is sane... yes > checking for a thread-safe mkdir -p... /usr/bin/mkdir -p > checking for gawk... gawk > checking whether make sets $(MAKE)... yes > checking whether make supports nested variables... yes > checking whether to enable maintainer-specific portions of > Makefiles... > no > checking ABI=64 > checking compiler gcc -O2 -pedantic -fomit-frame-pointer -m64 ... no > checking ABI=x32 > checking compiler gcc -O2 -pedantic -fomit-frame-pointer -mx32 ... no > checking ABI=32 > checking compiler gcc -m32 -O2 -pedantic -fomit-frame-pointer ... no > checking compiler gcc -O2 -pedantic -fomit-frame-pointer ... no > configure: error: could not find a working compiler, see config.log > for > details > (at easybuild/tools/run.py:681 in parse_cmd_output) > == 2023-10-25 08:20:03,546 build_log.py:267 INFO ... (took 6 mins 34 > secs) > == 2023-10-25 08:20:03,548 filetools.py:2012 INFO Removing lock > /apps/software/.locks/_apps_software_GCCcore_10.3.0.lock... > == 2023-10-25 08:20:03,548 filetools.py:383 INFO Path > /apps/software/.locks/_apps_software_GCCcore_10.3.0.lock successfully > removed. > == 2023-10-25 08:20:03,548 filetools.py:2016 INFO Lock removed: > /apps/software/.locks/_apps_software_GCCcore_10.3.0.lock > == 2023-10-25 08:20:03,548 easyblock.py:4277 WARNING build failed > (first 300 chars): cmd " ./configure -- > prefix=/apps/tmp/GCCcore/10.3.0/system-system/gcc-10.3.0/stage2_stuff > - > -with-pic --disable-shared --enable-cxx --enable-fat --build=x86_64- > pc-linux-gnu --host=x86_64-pc-linux-gnu" exited with exit code 1 and > output: > checking build system type... x86_64-pc-linux-gnu > > > Here it says: configure: error: could not find a working compiler, > see > config.log for details > > what am I missing? > > Borut > > On Wed, 2023-10-25 at 10:23 +0200, Loris Bennett wrote: > > Hi Borut, > > configure: error: could not find a working compiler, see config.log > > for details > > Borut Rozman <[email protected]> writes: > > > > > Hi Loris, > > > > > > Looks like something was wrong before as today I could build it > > > with no > > > problems, I had to first build GCC 8.3 and then build Bowtie2 v > > > 2.3.5.1, for some reason directly building it did not work. > > > > Did you perhaps forget the option '--robot'? This should cause all > > missing dependencies, such as the appropriate version of the > > compile, > > to > > be built automatically. > > > > Cheers, > > > > Loris > > > > > Sorry for the confusion, > > > Borut > > > > > > > > > On Wed, 2023-10-25 at 07:48 +0200, Loris Bennett wrote: > > > > Hi Borut, > > > > > > > > Borut Rozman <[email protected]> writes: > > > > > > > > > Hi everyone, > > > > > > > > > > Has anyone managed to build Bowtie2 2.3.5.1 with gcc 11.3.0 ? > > > > > Since > > > > > I > > > > > run on ubuntu 22.04 nothing below 11.2.0 version of gcc does > > > > > not > > > > > compile which is quite stressful as some users request > > > > > ancient > > > > > software :/ > > > > > > > > You have a double negative there which makes it slightly > > > > difficult to > > > > understand your problem. Do you mean that you can't compile > > > > anything > > > > which uses GCC 11.2.0 or earlier? If so, why not? > > > > > > > > Whether or not you use Ubuntu 22.04 should not make a > > > > difference. No > > > > matter what version of GCC the operating system provides, you > > > > should > > > > still be able to build toolchains with later versions. For > > > > example, > > > > the > > > > default version of GCC on our system is 4.8.5, but we have > > > > software > > > > built with versions 7.3.0 to 12.2.0. > > > > > > > > Or have I misunderstood your problem? > > > > > > > > Cheers, > > > > > > > > Loris > > > > > > > >
