Note also, that if the pullup that's already there is very weak, the rise 
time would be slowed down, but the fall time would be fast. This could 
produce what we see in the encoder-a trace.  The 1k pullups might bring 
that trace closer to 50% duty cycle.

>> .  I would think a 1 K Ohm
>> resistor from +5 V to the A and B would make a big difference.  You can 
>> get +5 V from the game port or a
>> hard drive plug.  Yup, also looking closer, I see COORDINATED spikes in 
>> both A and B on a number of
>> cycles.  That reinforces my suspicion of the above.
>>     

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