-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On 1/21/10 10:46 AM, Jean-Luc JANY wrote: > Hi everyone, > > I had a very similar problem to the one encountered by Eric Donaldson on > 12/14. I actually wanted to run a perl script referring to some entities of > the Bioperl package. The script, one launched, yields the following message: > > Can't locate Bio/DB/GenBank.pm in @INC (@INC contains: > /sw/lib/perl5/5.8.8/darwin-thread-multi-2level /sw/lib/perl5/5.8.8 > /sw/lib/perl5/darwin-thread-multi-2level > /sw/lib/perl5/5.8.8/darwin-thread-multi-2level /sw/lib/perl5 > /sw/lib/perl5/darwin /sw/lib/perl5-core/5.8.8/darwin-thread-multi-2level > /sw/lib/perl5-core/5.8.8 > /sw/lib/perl5/site_perl/5.8.8/darwin-thread-multi-2level > /sw/lib/perl5/site_perl/5.8.8 > /sw/lib/perl5/site_perl/5.8.8/darwin-thread-multi-2level > /sw/lib/perl5/site_perl .) at ret.pl line 2. > BEGIN failed--compilation aborted at ret.pl line 2. > > I do not think it is a problem of Perl version (I had this kind of problem > more than one year ago and could solve it thank to you and to the maintainer > of the bioperl package) since my bioperl package and my perl version seem to > be okay. > > This is perl, v5.8.8 built for darwin-thread-multi-2level >
What command did you run to get this output? Without knowing that it's hard to say what's going on. > Might it be due to a problem of path? > > Thank you very much in anticipation. > > > You're not on 10.5. I'll assume that you're on 10.6. How are you running the script (as in the literal command)? What is the top line of your script? (e.g. '#!/usr/bin/perl') What do you get from "which perl"? What do you get from "dpkg -S Bio/DB/GenBank.pm"? - -- Alexander Hansen Fink User Liaison -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.10 (Darwin) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iEYEARECAAYFAktYj9QACgkQB8UpO3rKjQ9X6wCfUzFbzQER4c2r4Po48QZ+Xcrh 1MUAoKCFf0xn051Ekn6nCNVGkrylKc4R =id2A -----END PGP SIGNATURE----- ------------------------------------------------------------------------------ Throughout its 18-year history, RSA Conference consistently attracts the world's best and brightest in the field, creating opportunities for Conference attendees to learn about information security's most important issues through interactions with peers, luminaries and emerging and established companies. http://p.sf.net/sfu/rsaconf-dev2dev _______________________________________________ Fink-beginners mailing list [email protected] http://news.gmane.org/gmane.os.apple.fink.beginners
