-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On 1/22/10 9:24 AM, Jean-Luc JANY wrote: > Hi, > > Thanks a lot for your quick answer. > >> What command did you run to get this output? Without knowing that it's >> hard to say what's going on. > > > macbook-pro-de-jean-luc-jany:~ jean-lucjany$ perl ret.pl > > Can't locate Bio/DB/GenBank.pm in @INC (@INC contains: > /sw/lib/perl5/5.8.8/darwin-thread-multi-2level /sw/lib/perl5/5.8.8 > /sw/lib/perl5/darwin-thread-multi-2level > /sw/lib/perl5/5.8.8/darwin-thread-multi-2level /sw/lib/perl5 > /sw/lib/perl5/darwin /sw/lib/perl5-core/5.8.8/darwin-thread-multi-2level > /sw/lib/perl5-core/5.8.8 > /sw/lib/perl5/site_perl/5.8.8/darwin-thread-multi-2level > /sw/lib/perl5/site_perl/5.8.8 > /sw/lib/perl5/site_perl/5.8.8/darwin-thread-multi-2level > /sw/lib/perl5/site_perl .) at ret.pl line 2. > BEGIN failed--compilation aborted at ret.pl line 2. > > macbook-pro-de-jean-luc-jany:~ jean-lucjany$ ./ret.pl > -bash: ./ret.pl: Permission denied > > > The top lines of the script are : > > #!/sw/bin/perl -w > use Bio::DB::GenBank; > use Bio::DB::Query::GenBank; > use Bio::SeqIO; > > Which perl yields : > > macbook-pro-de-jean-luc-jany:~ jean-lucjany$ which perl > /sw/bin/perl > > and unfortunately (I did not try before) dpkg -S Bio/DB/GenBank.pm yields: > > macbook-pro-de-jean-luc-jany:~ jean-lucjany$ dpkg -S Bio/DB/GenBank.pm > dpkg : *Bio/DB/GenBank.pm* introuvable. > > > Thank you for your help, > > >
How about "fink list -t bioperl"? - -- Alexander Hansen Fink User Liaison -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.10 (Darwin) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iEYEARECAAYFAktZuZkACgkQB8UpO3rKjQ9aHQCfcyV+HSWWR676glooG9hjGoJU EJIAmwQJ9UlpebWjmgcgJhfw2+77kEQR =XLvk -----END PGP SIGNATURE----- ------------------------------------------------------------------------------ Throughout its 18-year history, RSA Conference consistently attracts the world's best and brightest in the field, creating opportunities for Conference attendees to learn about information security's most important issues through interactions with peers, luminaries and emerging and established companies. http://p.sf.net/sfu/rsaconf-dev2dev _______________________________________________ Fink-beginners mailing list [email protected] http://news.gmane.org/gmane.os.apple.fink.beginners
