Hi Alexander, I tried that and got this error:
Can't locate Bio/SearchIO.pm in @INC (@INC contains: /sw/lib/perl5/darwin-thread-multi-2level /sw/lib/perl5 /sw/lib/perl5/darwin /Library/Perl/Updates/5.10.0 /System/Library/Perl/5.10.0/darwin-thread-multi-2level /System/Library/Perl/5.10.0 /Library/Perl/5.10.0/darwin-thread-multi-2level /Library/Perl/5.10.0 /Network/Library/Perl/5.10.0/darwin-thread-multi-2level /Network/Library/Perl/5.10.0 /Network/Library/Perl /System/Library/Perl/Extras/5.10.0/darwin-thread-multi-2level /System/Library/Perl/Extras/5.10.0 .) at blastparser.new.pl line 8. BEGIN failed--compilation aborted at blastparser.new.pl line 8. ----- Original Message ----- From: Alexander Hansen <[email protected]> Date: Monday, December 14, 2009 3:13 pm Subject: Re: [Fink-beginners] bioperl install To: [email protected] Cc: [email protected] > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA1 > > On 12/14/09 2:33 PM, [email protected] wrote: > > Hello everyone, > > > > I am trying to install bioperl on my new macbook pro that is > running Mac > > OSX 10.6. I downloaded fink and was able to install the > bioperl-pm588 > > packages (there were no package for 5100), but I keep getting > an error > > when trying to run a bioperl script. I think the problem > is that I > > installed bioperl to work with perl 5.8.8 and my default perl > is 5.10.0; > > but I do not know how to solve this problem. > > > > Does anyone know how to install bioperl on mac os 10.6? > > > > Thanks for your help, > > > > Eric > > > > > > Eric F. Donaldson, Ph.D. Research Assistant Professor, Ralph > Baric Lab > > University of North Carolina Department of Epidemiology > > > > > > Without seeing your script or the error it's hard to say what's going > on, but in general, to make a script use a particular perl interpreter > you'd want to replace the > > #!/usr/bin/perl > > at the beginning with e.g. > > #!/sw/bin/perl5.8.8 > > - -- > Alexander Hansen > Fink User Liaison > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v1.4.10 (Darwin) > Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ > > iEYEARECAAYFAksmnGYACgkQB8UpO3rKjQ8waACfXbGOwj4t0PJsmJP6cQ+fnda1 > YLYAnRUs/L1xMHju86mkFi5YTDvbEe23 > =EbQk > -----END PGP SIGNATURE----- > Eric F. Donaldson, Ph.D. Research Assistant Professor, Ralph Baric Lab University of North Carolina Department of Epidemiology
begin:vcard n:Donaldson;Eric fn:Eric F. Donaldson, PhD tel;work:919.966.3881 org:University of North Carolina, School of Medicine;Epidemiology adr:;;2107 McGavran-Greenberg Hall CB# 7435 ;Chapel Hill;NC;27599;USA email;internet:[email protected] email;home;internet:[email protected] title:Research Assistant Professor version:2.1 end:vcard
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