-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On 1/28/11 10:34 AM, Shae Padrick wrote: > Hi there... > > The emboss package installation from source is failing with the > following being the last few lines before the recommendation to write > fink beginners, run self update etc. I'm using OsX 10.6.6, XCode 3.2.5 > and Fink 0.29.19. I'm doing the installation using "fink install emboss". > > ------------------ > checking if java include directory given... yes > Java directory > /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home exists > checking for javac... yes > checking if java OS include directory given... yes > Javaos directory > /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/include > does not exist > make > make: *** No targets specified and no makefile found. Stop. > ### execution of /var/tmp/tmp.1.zsdGkF failed, exit code 2 > Removing runtime build-lock... > Removing build-lock package... > /sw/bin/dpkg-lockwait -r fink-buildlock-emboss-6.3.1-102 > (Reading database ... 91066 files and directories currently installed.) > Removing fink-buildlock-emboss-6.3.1-102 ... > Failed: phase compiling: emboss-6.3.1-102 failed > ------------------ > > I've consistently received this failure for emboss.
Fink's builds are _supposed_ to be consistent, barring changes in the system, even failures. Since getting this > the first time, I've self-updated several times with no problems, > enabled unstable tree, and installed gnuplot, scipy, numpy, matplotlib > and various other packages with no trouble. But this error persists, so > I think this is a problem with the package script, perhaps specific to > this version of OSX. It's due to changes in Java that Apple made before 10.6.5, which affect individual java-using packages. > > If I look in the > directory /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/ > there is an include directory there, but not > in /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home. > > Shae > > ------------------------------------------------------------------------ > > UT Southwestern Medical Center > The future of medicine, today. > > > Are you _sure_ that you're using the unstable tree? If you didn't selfupdate after turning on unstable, you may not have downloaded the unstable tree package descriptions. I get the following on 10.6/unstable at the same point: checking if java include directory given... yes Java directory /Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Home exists checking for javac... yes checking if java OS include directory given... yes Javaos directory /Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Home/include exists so I suspect that you may not actually be using the unstable package description. You can confirm this by running fink dumpinfo -finfofile emboss - -- Alexander Hansen, Ph.D. Fink User Liaison -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.11 (Darwin) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iEYEARECAAYFAk1C6v8ACgkQB8UpO3rKjQ98twCeMQqczHC+iH9KWsh66ikQekam dzAAmgIyQBJt2M7VhmOuoJNhu+W2tok4 =5YXt -----END PGP SIGNATURE----- ------------------------------------------------------------------------------ Special Offer-- Download ArcSight Logger for FREE (a $49 USD value)! Finally, a world-class log management solution at an even better price-free! Download using promo code Free_Logger_4_Dev2Dev. Offer expires February 28th, so secure your free ArcSight Logger TODAY! http://p.sf.net/sfu/arcsight-sfd2d _______________________________________________ Fink-beginners mailing list [email protected] http://news.gmane.org/gmane.os.apple.fink.beginners
