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On 1/28/11 12:46 PM, Shae Padrick wrote:
> To my eye there are a few line break differences, and the substitution of
> /sw32 for /sw everywhere. Otherwise identical to my eye.
>
> I get:
>
> $ fink dumpinfo -fconfigureparams -fcompilescript emboss
> Information about 9947 packages read in 1 seconds.
> configureparams: --prefix=/sw --with-java=${java_home} \
> --with-javaos=${java_home}/include \ --enable-dependency-tracking
> --disable-static \ --includedir=/sw/lib/EMBOSS/include
> --libdir=/sw/lib/EMBOSS/lib \ --docdir=/sw/share/EMBOSS \ --enable-systemlibs
> --with-postgresql=/sw/opt/postgresql-8.4/bin/pg_config
> compilescript:
> #!/bin/sh -ev
> /sw/bin/autoreconf -fi
> if [ -x /usr/libexec/java_home ]; then
> export java_home=`/usr/libexec/java_home`
> else
> export
> java_home=/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home
> fi
> ./configure --prefix=/sw --with-java=${java_home} \
> --with-javaos=${java_home}/include \
> --enable-dependency-tracking --disable-static \
> --includedir=/sw/lib/EMBOSS/include --libdir=/sw/lib/EMBOSS/lib \
> --docdir=/sw/share/EMBOSS \
> --enable-systemlibs --with-postgresql=/sw/opt/postgresql-8.4/bin/pg_config
> make
> fink-package-precedence \
> --prohibit-bdep=emboss-libajax6-dev,emboss-libnucleus6-dev \
>
> --prohibit-bdep=emboss-ajax6-dev,emboss-nucleus6-dev,emboss-plplot3-dev,emboss-plplot6-dev
> \
> .
>
>
> and:
> $ /usr/libexec/java_home
> /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home
>
> And I think I mentioned this before (this is as provided by Apple):
> $ ls /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home
> bin bundle lib man
> $ ls /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/
> Classes Headers Info.plist MacOS include
> Commands Home Libraries Resources version.plist
>
> which seems consistent with the error I was getting.
>
> Shae
>
Indeed. I get:
$ /usr/libexec/java_home
/Library/Java/JavaVirtualMachines/1.6.0_22-b04-307.jdk/Contents/Home
What do you get from "pkgutil --file-info /usr/libexec/java_home"? I get
$ pkgutil --file-info /usr/libexec/java_home
volume: /
path: /usr/libexec/java_home
pkgid: com.apple.pkg.Java
pkg-version: 10.6.0.1.1.1249291854
install-time: 1282521021
uid: 0
gid: 0
mode: 755
pkgid: com.apple.pkg.JavaCommon
pkg-version: 1.0.1.1247562015
install-time: 1287704988
uid: 0
gid: 0
mode: 755
pkgid: com.apple.pkg.JavaForMacOSX10.6Update2
pkg-version: 10.6.0.1.1.1247562015
install-time: 1282529857
uid: 0
gid: 0
mode: 755
pkgid: com.apple.pkg.JavaForMacOSX10.6Update3
pkg-version: 10.6.0.1.1.1247562015
install-time: 1287704868
uid: 0
gid: 0
mode: 755
Emboss's packaging assumes that people have applied the latest Java
updates on 10.5 and 10.6, so if for some reason those haven't been
applied on your system, that could well account for the failure.
- --
Alexander Hansen, Ph.D.
Fink User Liaison
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